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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gallstones TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. —
Gallstones Urban-schosser-spohr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. —
Gallstones VPS11-related neurological disorder
1 gene
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1 of 1 corroborated by 2+ sources
VPS11(2)
0.008 1.000 8.05e-3 9.35e-3 ✓ sig. —
Aortic aneurysm Vitreous body disease
1 gene
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NCKAP5(1)
0.016 0.500 8.04e-3 9.34e-3 ✓ sig. Cluster 12 →
Cystic fibrosis Pancreatic trypsinogen deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRSS1(2)
0.016 0.500 8.04e-3 9.34e-3 ✓ sig. —
Pachyonychia congenita Seborrheic keratosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT6A(7)
0.029 0.250 8.03e-3 9.33e-3 ✓ sig. —
Developmental delay with impaired growth and dysmorphic facies Distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(4)
0.029 0.250 8.03e-3 9.33e-3 ✓ sig. —
Thoracic aortic aneurysm and aortic dissection Throat disease
1 gene
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1 of 1 corroborated by 2+ sources
GATA5(2)
0.023 0.333 7.97e-3 9.26e-3 ✓ sig. —
Huntington disease Rib fracture
1 gene
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TENM2(1)
0.016 0.500 7.91e-3 9.19e-3 ✓ sig. —
Myositis Neuroocular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRR12(5)
0.016 0.500 7.91e-3 9.19e-3 ✓ sig. Cluster 25 →
Epilepsy due to perinatal stroke Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
CERKL-related retinopathy Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Cernunnos-XLF deficiency Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Chromosome 12p deletion syndrome Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
ERC1(3)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Cleft lip and palate, craniofacial dysmorphism, congenital heart defect, hearing loss syndrome Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
cone-rod dystrophy 20 Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Peptic ulcer disease Riboflavin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(4)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Peptic ulcer disease short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A7(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
hermansky-pudlak syndrome 8 Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
maternal riboflavin deficiency Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Muggenthaler-chowdhury-chioza syndrome Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Congenital disorder of deglycosylation Hyperlipoproteinemia
1 gene
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NEIL1(1)
0.023 0.333 7.77e-3 9.07e-3 ✓ sig. Cluster 141 →
Congenital cataract Congenital cataract facial dysmorphism neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA3(2)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. Cluster 43 →
Congenital cataract Congenital lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
HSF4(2)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. Cluster 43 →
Frontotemporal dementia Oculopharyngeal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.