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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
combined immunodeficiency due to OX40 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to STK4 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
STK4(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to ZAP70 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
congenital disorder of glycosylation type II Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP1(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis Congenital microvillous atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency Natural killer cell deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MCM4(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
neurodevelopmental disorder with hypotonia, neuropathy, and deafness Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN4(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 5 →
Immunodeficiency neutrophil immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAC2(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Immunodeficiency NIK deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K14(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
nizon-isidor syndrome Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 33 →
Immunodeficiency non-severe combined immunodeficiency due to COPG1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
COPG1(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
Cholelithiasis hemochromatosis type 2A
1 gene
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1 of 1 corroborated by 2+ sources
HJV(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma hereditary mixed polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GREM1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 20 →
hereditary sclerosing poikiloderma with tendon and pulmonary involvement Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FAM111B(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 5 →
hermansky-pudlak syndrome 3 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS3(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
hermansky-pudlak syndrome 5 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
hermansky-pudlak syndrome 6 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS6(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis Hyperbiliverdinemia
1 gene
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1 of 1 corroborated by 2+ sources
BLVRA(7)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 226 →
Hyperinflammatory lymphoproliferative immunodeficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
NCKAP1L(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis hyperphenylalaninemia due to DNAJC12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC12(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 226 →
Cholelithiasis Peliosis hepatis
1 gene
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1 of 1 corroborated by 2+ sources
F2RL3(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 226 →
Immunodeficiency platelet abnormalities with eosinophilia and immune-mediated inflammatory disease
1 gene
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1 of 1 corroborated by 2+ sources
ARPC1B(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
platelet abnormalities with eosinophilia and immune-mediated inflammatory disease Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
ARPC1B(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
platelet-type bleeding disorder 15 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
ACTN1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 33 →
platelet-type bleeding disorder 20 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.