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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ectopic thyroid tissue Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
FBXO31(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Epilepsy due to perinatal stroke Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Cranio-cervical dystonia Seizures
1 gene
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1 of 1 corroborated by 2+ sources
ANO3(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Neoplasms Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD7(3)
0.020 0.333 9.13e-3 1.04e-2 ✓ sig. —
Carpenter syndrome Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(5)
0.020 0.333 9.13e-3 1.04e-2 ✓ sig. —
Congenital disorder of deglycosylation Hypogonadotropic hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
MAN2C1(5)
0.020 0.333 9.13e-3 1.04e-2 ✓ sig. —
Congenital cerebellar ataxia Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
GRM1(3)
0.014 0.500 9.07e-3 1.04e-2 ✓ sig. —
Ataxia, spastic, autosomal dominant Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
VAMP1(6)
0.014 0.500 9.07e-3 1.04e-2 ✓ sig. —
Autonomic nervous system disease Congenital heart defects
1 gene
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1 of 1 corroborated by 2+ sources
ECE1(2)
0.014 0.500 9.07e-3 1.04e-2 ✓ sig. —
Bulimia Graft versus host disease
1 gene
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PCDH7(1)
0.037 0.143 9.06e-3 1.04e-2 ✓ sig. —
Erythrocyte udp-galactose-4-epimerase deficiency Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Expressive language delay Pelvic organ prolapse
1 gene
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1 of 1 corroborated by 2+ sources
KLF7(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
FADD-related immunodeficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FADD(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
fanconi anemia complementation group i Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
FNIP1-associated syndrome Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
galactose epimerase deficiency Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Ghosal hematodiaphyseal dysplasia Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
TBXAS1(7)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma glycosylphosphatidylinositol biosynthesis defect 21
1 gene
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1 of 1 corroborated by 2+ sources
PIGU(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
granulocytopenia with immunoglobulin abnormality Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
HYOU1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
gray platelet syndrome Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
NBEAL2(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Autoimmune enteropathy and endocrinopathy Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(6)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
combined immunodeficiency due to CD3gamma deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to GINS1 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
GINS1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →
combined immunodeficiency due to MALT1 deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
combined immunodeficiency due to moesin deficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
MSN(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 10 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.