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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypertension Trimethylaminuria
1 gene
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1 of 1 corroborated by 2+ sources
FMO3(5)
0.001 0.500 1.44e-1 1.45e-1 Cluster 6 →
adult neuronal ceroid lipofuscinosis Hypertension
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC5(2)
0.001 0.500 1.44e-1 1.45e-1 —
5-oxoprolinase deficiency Alzheimer disease
1 gene
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OPLAH(1)
0.000 1.000 1.44e-1 1.45e-1 —
Acyl-coa binding domain containing protein 5 deficiency Alzheimer disease
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Vacuolar neuromyopathy
1 gene
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1 of 1 corroborated by 2+ sources
PLIN4(5)
0.000 1.000 1.44e-1 1.45e-1 Cluster 2 →
Alzheimer disease X-linked opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MID1(4)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Desanto-shinawi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WAC(6)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Desmosterolosis
1 gene
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1 of 1 corroborated by 2+ sources
DHCR24(7)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Developmental delay and seizures
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(5)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease DHDDS-CDG
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Dihydropteridine reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
QDPR(5)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Ehrlich tumor carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease immunodeficiency 65, susceptibility to viral infections
1 gene
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1 of 1 corroborated by 2+ sources
IRF9(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Intellectual developmental disorder dysmorphic cardiac
1 gene
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1 of 1 corroborated by 2+ sources
TMEM94(4)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Intellectual developmental disorder dysmorphic ocular
1 gene
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1 of 1 corroborated by 2+ sources
MTSS2(4)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Mak-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MAK(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease mitchell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease mosaic variegated aneuploidy syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CEP57(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Muggenthaler-chowdhury-chioza syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Costeff optic atrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease FNIP1-associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Galactose mutarotase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GALM(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease glutamate pyruvate transaminase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GPT2(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease ciliary dyskinesia, primary, 48, without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
NME5(2)
0.000 1.000 1.44e-1 1.45e-1 —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.