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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
ciliary dyskinesia, primary, 49, without situs inversus Estrogen-receptor negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
CFAP74(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus Early-onset calcifying leukoencephalopathy-skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(3)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Brain abnormalities neurodegeneration dysosteosclerosis Diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(5)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus immune dysregulation, autoimmunity, and autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PLCG1(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus leukoencephalopathy, diffuse hereditary, with spheroids 1
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus mehmo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2S3(3)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. Cluster 73 →
Autoimmune nervous system disorder Common variable immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
EOMES(3)
0.013 0.250 1.93e-2 2.11e-2 ✓ sig. —
Mood disorder pseudohypoaldosteronism type 2E
1 gene
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1 of 1 corroborated by 2+ sources
CUL3(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
chondrodysplasia with joint dislocations, gpapp type Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Choreoacanthocytosis Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
ciliary dyskinesia, primary, 45 Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
TTC12(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Congenital small-platelet thrombocytopenia Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Mood disorder thrombocytopenia 3
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Mood disorder xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Borderline personality disorder Mood disorder
1 gene
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TPH1(1)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Malonic aciduria Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
MLYCD(8)
0.007 0.500 1.95e-2 2.13e-2 ✓ sig. —
Neuroblastoma Ocular anomalies with axonal neuropathy and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CHD5(2)
0.007 0.500 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Helsmoortel-van der aa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADNP(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma hypomyelinating leukodystrophy 5
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma fibrodysplasia ossificans progressiva
1 gene
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1 of 1 corroborated by 2+ sources
ACVR1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma GM3 synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma cardiomyopathy, dilated, 2k
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Rhizomelic limb shortening with dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
PKDCC(5)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.