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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
intellectual developmental disorder, autosomal dominant 65 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
KDM4B(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Benign familial pemphigus Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP2C1(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Cystinuria Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A9(8)
0.019 0.250 1.24e-2 1.39e-2 ✓ sig. —
Circadian rhythm sleep disorder Hyperuricemia
1 gene
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CNTN5(1)
0.015 0.333 1.24e-2 1.39e-2 ✓ sig. —
Childhood-onset basal ganglia degeneration syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
VAC14(3)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
CNGB1-related retinopathy Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CNGB1(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Cataract-growth hormone deficiency-skeletal dysplasia syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
IARS2(5)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Ataxia with oculomotor apraxia and hypoalbuminemia Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
APTX(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Axonal neuropathy with neuromyotonia Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
HINT1(3)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
glycogen storage disease IXd Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PHKA1(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
goldberg-shprintzen syndrome Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
KIFBP(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Ectopic thyroid tissue Peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBXO31(2)
0.005 1.000 1.25e-2 1.39e-2 ✓ sig. —
Acetyl-coa carboxylase deficiency Celiac disease
1 gene
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1 of 1 corroborated by 2+ sources
ACACA(2)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. —
Beta-ureidopropionase deficiency Celiac disease
1 gene
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1 of 1 corroborated by 2+ sources
UPB1(6)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. —
Celiac disease immunodeficiency 109 with lymphoproliferation
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF9(3)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. —
Celiac disease isolated sulfite oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. Cluster 39 →
Celiac disease phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(3)
0.005 1.000 1.25e-2 1.40e-2 ✓ sig. —
Glomerulonephritis Omodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPC6(6)
0.010 0.500 1.26e-2 1.40e-2 ✓ sig. —
Brody myopathy Glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
RABEP2(2)
0.010 0.500 1.26e-2 1.40e-2 ✓ sig. —
Bladder calculus Oculopharyngodistal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
GIPC1(5)
0.023 0.200 1.26e-2 1.41e-2 ✓ sig. —
Diaphragm disease Preeclampsia
1 gene
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WNT3A(1)
0.010 0.500 1.27e-2 1.42e-2 ✓ sig. —
Adenoid cystic carcinoma Diaphragm disease
1 gene
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1 of 1 corroborated by 2+ sources
WNT5B(2)
0.010 0.500 1.29e-2 1.45e-2 ✓ sig. —
Arginine vasopressin resistance Seasonal allergic rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
AQP2(2)
0.010 0.500 1.29e-2 1.45e-2 ✓ sig. —
Central hypoventilation syndrome Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
PHOX2B(6)
0.014 0.333 1.30e-2 1.45e-2 ✓ sig. Cluster 387 →
Hirschsprung disease Hyperglycinuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(2)
0.014 0.333 1.30e-2 1.45e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.