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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Leigh syndrome pyruvate dehydrogenase E3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DLD(2)
0.009 1.000 6.95e-3 8.23e-3 ✓ sig. —
Amnesia Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GNAI1(3)
0.042 0.167 6.99e-3 8.28e-3 ✓ sig. —
Autoimmune nervous system disorder Hepatolenticular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
ANXA5(2)
0.032 0.250 7.00e-3 8.28e-3 ✓ sig. —
Lipoyltransferase deficiency Ventricular fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
LIPT2(2)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
Proliferative diabetic retinopathy Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT2(5)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
1p36.33 duplication syndrome Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(2)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
Brain infarction Cerebral artery occlusion
1 gene
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ADGRE3(1)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
Autonomic nervous system disease Psoriasis vulgaris
1 gene
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ELMO1(1)
0.018 0.500 7.00e-3 8.29e-3 ✓ sig. —
Giant axonal neuropathy Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
GAN(7)
0.018 0.500 7.00e-3 8.29e-3 ✓ sig. Cluster 243 →
Goldenhar syndrome Periodic limb movement disorder
1 gene
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1 of 1 corroborated by 2+ sources
MYT1(2)
0.048 0.100 7.12e-3 8.43e-3 ✓ sig. —
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency Dysarthria
1 gene
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SURF1(1)
0.037 0.200 7.12e-3 8.43e-3 ✓ sig. —
Synovitis, acne, pustulosis, hyperostosis, and osteitis Urogenital neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WNT7A(4)
0.037 0.200 7.12e-3 8.43e-3 ✓ sig. —
Hemolytic anemia Rh isoimmunization
1 gene
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1 of 1 corroborated by 2+ sources
RHD(2)
0.018 0.500 7.13e-3 8.44e-3 ✓ sig. —
Hemolytic anemia Pyruvate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.018 0.500 7.13e-3 8.44e-3 ✓ sig. —
Hemolytic anemia Hemolytic disease of fetus and newborn
1 gene
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1 of 1 corroborated by 2+ sources
RHD(3)
0.018 0.500 7.13e-3 8.44e-3 ✓ sig. —
Atypical femoral fracture Spastic paraplegia, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
SPAST(2)
0.025 0.333 7.19e-3 8.51e-3 ✓ sig. —
Autoinflammatory syndrome Griscelli syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB27A(7)
0.025 0.333 7.19e-3 8.51e-3 ✓ sig. —
gray platelet syndrome Keratoconus
1 gene
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1 of 1 corroborated by 2+ sources
NBEAL2(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
hearing impairment and infertile male syndrome Male infertility
1 gene
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1 of 1 corroborated by 2+ sources
CDC14A(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
COG5-congenital disorder of glycosylation Dyslexia
1 gene
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1 of 1 corroborated by 2+ sources
COG5(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Congenital plasmin inhibitor deficiency Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Corneal degeneration Keratoconus
1 gene
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RDH8(1)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Corneal injury Keratoconus
1 gene
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1 of 1 corroborated by 2+ sources
ALDH3A1(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Demyelinating leukodystrophy Dyslexia
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Dentici novelli neurodevelopmental syndrome Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
ZNF526(4)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. Cluster 225 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.