Gene Gene information from NCBI Gene database.
Entrez ID 1738
Gene name Dihydrolipoamide dehydrogenase
Gene symbol DLD
Synonyms (NCBI Gene)
DLDDDLDHE3GCSLLADOGDC-E3PHE3
Chromosome 7
Chromosome location 7q31.1
Summary This gene encodes a member of the class-I pyridine nucleotide-disulfide oxidoreductase family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. In homodimeric form, the e
SNPs SNP information provided by dbSNP.
39
SNP ID Visualize variation Clinical significance Consequence
rs111257462 G>A,C Likely-pathogenic Splice donor variant
rs121964987 A>G Pathogenic Missense variant, intron variant, coding sequence variant
rs121964988 C>T Pathogenic Missense variant, coding sequence variant
rs121964989 A>G Pathogenic Missense variant, coding sequence variant
rs121964990 G>C,T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
327
miRTarBase ID miRNA Experiments Reference
MIRT031565 hsa-miR-16-5p Proteomics 18668040
MIRT048620 hsa-miR-99a-5p CLASH 23622248
MIRT756164 hsa-miR-653-5p Luciferase reporter assayWestern blottingqRT-PCR 37334893
MIRT937933 hsa-miR-1 CLIP-seq
MIRT937934 hsa-miR-1208 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
54
GO ID Ontology Definition Evidence Reference
GO:0001669 Component Acrosomal vesicle IEA
GO:0004148 Function Dihydrolipoyl dehydrogenase (NADH) activity IBA
GO:0004148 Function Dihydrolipoyl dehydrogenase (NADH) activity IDA 9242632, 16442803
GO:0004148 Function Dihydrolipoyl dehydrogenase (NADH) activity IEA
GO:0004148 Function Dihydrolipoyl dehydrogenase (NADH) activity IMP 15712224
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
238331 2898 ENSG00000091140
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P09622
Protein name Dihydrolipoyl dehydrogenase, mitochondrial (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein)
Protein function Lipoamide dehydrogenase is a component of the glycine cleavage system as well as an E3 component of three alpha-ketoacid dehydrogenase complexes (pyruvate-, alpha-ketoglutarate-, and branched-chain amino acid-dehydrogenase complex) (PubMed:15712
PDB 1ZMC , 1ZMD , 1ZY8 , 2F5Z , 3RNM , 5J5Z , 5NHG , 6HG8 , 6I4P , 6I4Q , 6I4R , 6I4S , 6I4T , 6I4U , 6I4Z , 7PSC , 7ZYT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07992 Pyr_redox_2 42 370 Pyridine nucleotide-disulphide oxidoreductase Domain
PF02852 Pyr_redox_dim 389 498 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Domain
Sequence
Sequence length 509
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
37
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
DLD-related disorder Pathogenic; Likely pathogenic rs121964990, rs121964992 RCV004528103
RCV004528104
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Lactic acidosis Likely pathogenic; Pathogenic rs397514649 RCV005241235
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Pyruvate dehydrogenase E3 deficiency Pathogenic; Likely pathogenic rs757087726, rs2116277809, rs2116273912, rs2116206966, rs2116219533, rs1562919685, rs2116271469, rs1328820332, rs2116221384, rs778122189, rs2535601005, rs2535598841, rs2535598734, rs2535602325, rs952647277
View all (90 more)
RCV001382949
RCV001384807
RCV001924175
RCV001991221
RCV001941805
View all (107 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Thyroid cancer, nonmedullary, 1 Pathogenic rs121964990 RCV005887468
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANKYLOSING SPONDYLITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
B-CELL ACUTE LYMPHOBLASTIC LEUKEMIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations