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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ciliary dyskinesia primary ciliary dyskinesia 29
1 gene
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1 of 1 corroborated by 2+ sources
CCNO(6)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 30
1 gene
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1 of 1 corroborated by 2+ sources
ODAD3(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 32
1 gene
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1 of 1 corroborated by 2+ sources
RSPH3(6)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 33
1 gene
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1 of 1 corroborated by 2+ sources
DRC4(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 34
1 gene
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1 of 1 corroborated by 2+ sources
DNAJB13(6)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Ciliary dyskinesia primary ciliary dyskinesia 35
1 gene
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1 of 1 corroborated by 2+ sources
ODAD4(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia primary ciliary dyskinesia 5
1 gene
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1 of 1 corroborated by 2+ sources
HYDIN(7)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Ciliary dyskinesia primary ciliary dyskinesia 9
1 gene
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1 of 1 corroborated by 2+ sources
DNAI2(6)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. Cluster 9 →
Gestational diabetes Prolidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PEPD(3)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —
Corticobasal degeneration Costello syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOS1(3)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. Cluster 42 →
Optic neuritis Sensory peripheral neuropathy
1 gene
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ATP7B(1)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. —
Epidermodysplasia verruciformis Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RHOH(4)
0.050 0.143 5.90e-3 7.11e-3 ✓ sig. —
Nasopalpebral lipoma-coloboma syndrome Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZDBF2(3)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. Cluster 3 →
Sialidosis Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(6)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —
Congenital sialidosis Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(3)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —
ciliary dyskinesia, primary, 47, and lissencephaly Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP73(2)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —
Chromosomal disorder Nasal disorder
1 gene
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COBL(1)
0.037 0.250 5.96e-3 7.19e-3 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Ventricular dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
MFF(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Primary hypertrophic osteoarthropathy Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(6)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Anosmia Cerebral palsy
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Aortic valve stenosis Retinal detachment
1 gene
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ANKRD7(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Camptodactyly-arthropathy-coxa vara-pericarditis syndrome Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TPR(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Autonomic nervous system disease Immune system disease
1 gene
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ELMO1(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. Cluster 1 →
Urticaria Vitreous body disease
1 gene
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CNTRL(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Conjunctival disease Myelodysplastic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.