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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
BBS1-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS12-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS2-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS4-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS4(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS7-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS7(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Ablepharon macrostomia syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Abri amyloidosis Cerebral amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Acys amyloidosis Cerebral amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
CST3(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Acys amyloidosis Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
ALS2-related motor neuron disease Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
amyotrophic lateral sclerosis type 12 Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Developmental delay with intellectual disability and obesity Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism Diaphanospondylodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
BMPER(6)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 240 →
Male infertility large polyploid spermatozoa Spermatogenic failure, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFAP47(6)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Complex regional pain syndrome Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Pernicious anemia Splenic disease
1 gene
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CNTN5(1)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
autosomal dominant nonsyndromic hearing loss Machado-joseph disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP11A(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Body mass index Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Bone remodeling disease Parenchymal hematoma
1 gene
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PDZRN4(1)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
complex neurodevelopmental disorder with motor features Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
KMT2B(2)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Lennox-gastaut syndrome Synovial disorder
1 gene
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1 of 1 corroborated by 2+ sources
GABRB3(3)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. Cluster 47 →
Thyrotoxic periodic paralysis Trigeminal nerve disease
1 gene
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DCHS2(1)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Anal polyp Hydronephrosis
1 gene
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1 of 1 corroborated by 2+ sources
PTGES(3)
0.056 0.167 4.67e-3 5.79e-3 ✓ sig. —
Encephalitis Peroxisome biogenesis disorder
1 gene
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ABCD1(1)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic facial Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.