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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bardet-biedl syndrome BBS4-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS4(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome BBS5-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS5(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome BBS7-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS7(6)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome BBS9-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(6)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
BBS9-related ciliopathy Craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(3)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Martsolf syndrome Parenchymal hematoma
1 gene
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1 of 1 corroborated by 2+ sources
SEMA3A(2)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. —
Angelman syndrome Synovial disorder
1 gene
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1 of 1 corroborated by 2+ sources
GABRB3(3)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. —
Childhood absence epilepsy Synovial disorder
1 gene
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1 of 1 corroborated by 2+ sources
GABRB3(4)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. Cluster 47 →
Bile duct disorder Hypertensive heart disease
1 gene
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PRKAG2(1)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. —
Tricuspid valve disease Trigeminal nerve disease
1 gene
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KIF26B(1)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. —
Cholecystitis Upper extremity fracture
1 gene
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0.059 0.200 3.89e-3 4.94e-3 ✓ sig. —
Autosomal recessive ataxia Coenzyme q10 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
COQ8A(7)
0.059 0.200 3.89e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia with or without amyotrophic lateral sclerosis Paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SPG7(2)
0.059 0.200 3.89e-3 4.94e-3 ✓ sig. —
Autoimmune nervous system disorder Gastro-entero-pancreatic neuroendocrine tumor
1 gene
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1 of 1 corroborated by 2+ sources
EOMES(2)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Coloboma complex neurodevelopmental disorder with or without congenital anomalies
1 gene
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1 of 1 corroborated by 2+ sources
MYH10(2)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Congenital mirror movements Hereditary breast and ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAD51(2)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Gastro-entero-pancreatic neuroendocrine tumor MHC class II deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CIITA(2)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Hereditary breast and ovarian cancer syndrome Mirror movements
1 gene
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1 of 1 corroborated by 2+ sources
RAD51(6)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Glycinuria with/without oxalate urolithiasis Macular telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(2)
0.053 0.250 3.89e-3 4.94e-3 ✓ sig. —
Pseudo-torch syndrome Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
OCLN(6)
0.043 0.333 3.89e-3 4.94e-3 ✓ sig. —
Bulimia Congenital palmoplantar and perioral keratoderma of olmsted
1 gene
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1 of 1 corroborated by 2+ sources
PERP(2)
0.043 0.333 3.89e-3 4.94e-3 ✓ sig. —
Bulimia Olmsted syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PERP(5)
0.043 0.333 3.89e-3 4.94e-3 ✓ sig. —
Antiphospholipid syndrome Hepatitis c induced liver cirrhosis
1 gene
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HLA-DRA(1)
0.043 0.333 3.89e-3 4.94e-3 ✓ sig. Cluster 1 →
Cerebellar atrophy Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(5)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. —
Multiple system atrophy Rib fracture
1 gene
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TENM2(1)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. Cluster 207 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.