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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
HMGB1-related brachyphalangy, polydactyly and tibial aplasia syndrome Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Hemolytic anemia pyruvate kinase deficiency of red cells
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(3)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic cardiac short stature Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(3)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Clear cell renal cell carcinoma fanconi anemia complementation group d2
1 gene
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1 of 1 corroborated by 2+ sources
FANCD2(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Bisphosphoglycerate mutase deficiency Hemolytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
BPGM(4)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. Cluster 105 →
Brachyphalangy polydactyly tibial aplasia hypoplasia syndrome Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Camptodactyly Clear cell renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TLN2(3)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
8q24.3 microdeletion syndrome Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Chondromalacia Peritonitis
1 gene
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0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Machado-joseph disease Pemphigus vulgaris
1 gene
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THSD7B(1)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Jarcho-levin syndrome Mayer-rokitansky-kuster-hauser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX6(2)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Duodenitis Gallbladder disease
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(4)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Connective tissue neoplasm Pemphigus vulgaris
1 gene
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THSD7B(1)
0.067 0.143 3.63e-3 4.67e-3 ✓ sig. —
Congenital hydrocephalus Cryptospermia
1 gene
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1 of 1 corroborated by 2+ sources
TRIM71(4)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. Cluster 293 →
Houge janssens syndrome Papillary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5C(2)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Obstructive azoospermia Spermatogenic failure, y-linked
1 gene
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CFTR(1)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Endocrine system disease Parathyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
EBF2(3)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Anophthalmia Male reproductive system disease
1 gene
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1 of 1 corroborated by 2+ sources
WNT7B(2)
0.056 0.250 3.63e-3 4.67e-3 ✓ sig. —
Hepatic veno occlusive disease with immunodeficiency Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SP140(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. Cluster 225 →
Multinodular goiter Urofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(5)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Cerebellar ataxia, neuropathy, and vestibular areflexia Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(3)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
2,4-dienoyl-coa reductase deficiency Multinodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NADK2(4)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Acid-base disorder Oral cavity carcinoma
1 gene
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ADH1B(1)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —
Parapsoriasis Scleroderma
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.033 0.500 3.63e-3 4.67e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.