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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Mitochondrial myopathy with sideroblastic anemia Posterior cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PUS1(6)
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —
1p36 deletion syndrome complex neurodevelopmental disorder with or without congenital anomalies
1 gene
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1 of 1 corroborated by 2+ sources
RERE(3)
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —
Coats plus syndrome Dyskeratosis congenita
1 gene
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1 of 1 corroborated by 2+ sources
CTC1(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Amino acid metabolism disorder Hyperprolinemia
1 gene
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1 of 1 corroborated by 2+ sources
PRODH(6)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. Cluster 83 →
Ankle fracture Creutzfeldt-jakob disease
1 gene
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1 of 1 corroborated by 2+ sources
CPED1(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Arthritis Autoimmune interstitial lung disease-arthritis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COPA(5)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Dyskeratosis congenita Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
NPM1(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Craniofacial dysplasia short stature ectodermal anomalies intellectual disability syndrome Hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Amino acid metabolism disorder Creatine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GAMT(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Creutzfeldt-jakob disease Dementia in huntington’s disease
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(4)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Autoimmune pancreatitis Creutzfeldt-jakob disease
1 gene
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1 of 1 corroborated by 2+ sources
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Arthritis Giant axonal neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GAN(7)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Gm2 gangliosidosis Leukodystrophy
1 gene
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HEXA(1)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Amino acid metabolism disorder Thyroid hormone metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Bradycardia Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
UTS2(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Camos syndrome Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
WDR73(3)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Developmental delay with short stature and dysmorphic facial features Hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(7)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Duplication 15q11-q13 syndrome Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
AUTS2(2)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Dihydropteridine reductase deficiency Liver failure
1 gene
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1 of 1 corroborated by 2+ sources
QDPR(5)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 368 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1CC
1 gene
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1 of 1 corroborated by 2+ sources
NEXN(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1FF
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1Y
1 gene
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1 of 1 corroborated by 2+ sources
TPM1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1Z
1 gene
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1 of 1 corroborated by 2+ sources
TNNC1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 2A
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.