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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Left ventricular noncompaction cardiomyopathy MYPN-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Microphthalmia NAA10-related syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(7)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Brain neoplasms neuroblastoma, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
ALK(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Limb girdle muscular dystrophy neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 14 →
Developmental delay Neurooculocardio-genitourinary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR37(6)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cone dystrophy NMNAT1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NMNAT1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cone dystrophy occult macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
RP1L1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Microphthalmia Orbital disease
1 gene
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1 of 1 corroborated by 2+ sources
RARB(7)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Brooke-spiegler syndrome Uterine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CYLD(6)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
CACNA2D4-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cardiac and skeletal myopathy Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTN2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 4 →
cardiomyopathy, dilated, 2e Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
JPH2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 4 →
cardiomyopathy, dilated, 2l Left ventricular noncompaction cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Carnitine deficiency Dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Glycogen storage disease Seborrheic keratosis
2 genes
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2 of 2 corroborated by 2+ sources
TNNT2(3), PIK3CA(2)
0.030 0.065 2.50e-3 3.41e-3 ✓ sig. —
Bladder disease Pruritus
1 gene
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1 of 1 corroborated by 2+ sources
HRH1(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Leukocyte adhesion deficiency Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
FERMT3(7)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Mitochondrial encephalopathy Neuropathy, ataxia, and retinitis pigmentosa
1 gene
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COX3(1)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. Cluster 32 →
Hyperalphalipoproteinemia Malunion fracture
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Hypotonia-cystinuria syndrome Motor skills disorder
1 gene
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1 of 1 corroborated by 2+ sources
CAMKMT(3)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Constitutional mismatch repair deficiency Intellectual developmental disorder dysmorphic behavioral
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(7)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. Cluster 166 →
Intellectual developmental disorder dysmorphic behavioral Intracranial hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Cholesterol ester transfer protein deficiency Malunion fracture
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
1p36 deletion syndrome Schwartz-jampel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(6)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. Cluster 350 →
1p36 deletion syndrome Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SKI(6)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.