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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Benign mucous membrane pemphigoid with ocular involvement Congenital pulmonary artery atresia
1 gene
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0.071 0.333 2.14e-3 3.04e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Congenital pulmonary artery atresia
1 gene
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0.071 0.333 2.14e-3 3.04e-3 ✓ sig. Cluster 1 →
Arterial tortuosity syndrome Auditory system disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A10(7)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —
atypical hemolytic-uremic syndrome with DGKE deficiency Hemolytic uremic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(5)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Benign mesial temporal lobe epilepsy Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Parkinson-dementia syndrome Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
PROM1-related dominant retinopathy Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
PROM1-related recessive retinopathy Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hyperkinesia Prostatic disease
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias radioulnar synostosis with amegakaryocytic thrombocytopenia 1
1 gene
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1 of 1 corroborated by 2+ sources
HOXA11(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne immunodeficiency 123 with hpv-related verrucosis
1 gene
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1 of 1 corroborated by 2+ sources
CD28(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 114 →
Intellectual developmental disorder with retinitis pigmentosa Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
INTU-related skeletal ciliopathy Jeune thoracic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
INTU(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
joubert syndrome 21 Meckel-gruber syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 8 →
joubert syndrome 24 Meckel-gruber syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 8 →
joubert syndrome 3 Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AHI1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne thrombocytopenia 4
1 gene
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1 of 1 corroborated by 2+ sources
CYCS(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 114 →
Hemolytic uremic syndrome Thrombomodulin-related bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
THBD(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hemolytic uremic syndrome Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne Uridine monophosphate hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NT5C3A(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bronchitis Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Peripheral vascular disease Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hypoxia Wernicke encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TKT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.