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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cobblestone lissencephaly Coloboma
1 gene
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1 of 1 corroborated by 2+ sources
LAMB1(6)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Omodysplasia Secondary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
GPC6(6)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
46,xy gonadal dysgenesis Ovarian hyperstimulation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FSHR(6)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 38 →
Hyperpituitarism Recurrent multifocal osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
IL1R1(4)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Familial mediterranean fever Hyperpituitarism
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 57 →
Gastro-entero-pancreatic neuroendocrine tumor immunodeficiency 104
1 gene
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1 of 1 corroborated by 2+ sources
PTPRC(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic cerebellar Mitochondrial myopathy
1 gene
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CYTB(1)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Genitourinary disease Urinary system disease
1 gene
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BCAS3(1)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Lymphatic system disease Uterine prolapse
1 gene
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SLC12A2(1)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
inherited retinal dystrophy Microphthalmia with retinitis pigmentosa and ocular anomalies
1 gene
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1 of 1 corroborated by 2+ sources
C1QTNF5(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Autoinflammatory disease, familial, behcet-like 3 Cystitis
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Colobomatous microphthalmia Colobomatous optic disc macular atrophy chorioretinopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIX6(4)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 56 →
congenital heart disease with heterotaxy syndrome Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
NODAL(3)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
congenital heart disease with heterotaxy syndrome Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
NODAL(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Dyskinesia, drug-induced Tyrosine hydroxylase–deficient dopa-responsive dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TH(3)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Andersen-tawil syndrome Polymorphic catecholaminergic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ2(5)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Anorectal malformation X-linked dyskeratosis congenita
1 gene
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1 of 1 corroborated by 2+ sources
RTEL1(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Anorectal malformation Diffuse panbronchiolitis
1 gene
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1 of 1 corroborated by 2+ sources
MUC5B(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 197 →
Bradyopsia Dyskinesia, drug-induced
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(4)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 13 →
Parkinsonian-pyramidal syndrome Secondary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
SNCA(3)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. Cluster 256 →
Cleft lip and palate Eosinophilic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.059 0.500 1.95e-3 2.83e-3 ✓ sig. —
Developmental delay with or without epilepsy West syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Dna ligase iv deficiency Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Congenital cartilage disorder Dyggve-melchior-clausen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DYM(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Early-onset obesity-hyperphagia-severe developmental delay syndrome West syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTRK2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.