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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autoimmune lymphoproliferative syndrome type 2B Cerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital contractural arachnodactyly Trident hand
1 gene
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1 of 1 corroborated by 2+ sources
NPR2(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Heart valve prolapse Vitamin k deficiency
1 gene
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BGLAP(1)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 370 →
Congenital contractural arachnodactyly X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital contractural arachnodactyly X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly Xq25 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Focal segmental glomerulosclerosis inherited focal segmental glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome Intellectual developmental disorder seizures behavioral
1 gene
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1 of 1 corroborated by 2+ sources
ALG14(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
joubert syndrome 36 Macrogyria
1 gene
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1 of 1 corroborated by 2+ sources
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 110 →
CBL-related disorder Vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
CBL(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Charcot-Marie-Tooth disease dominant intermediate E Focal segmental glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
INF2(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Chromodomain helicase dna binding protein 8 overgrowth syndrome Congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Chromosome xq25 duplication syndrome Holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome congenital myasthenic syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital myasthenic syndrome congenital myasthenic syndrome 12
1 gene
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1 of 1 corroborated by 2+ sources
GFPT1(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital myasthenic syndrome congenital myasthenic syndrome 2A
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome congenital myasthenic syndrome 2C
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome congenital myasthenic syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
CHAT(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital myasthenic syndrome congenital myasthenic syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
SYT2(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital myasthenic syndrome congenital myasthenic syndrome 8
1 gene
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1 of 1 corroborated by 2+ sources
AGRN(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital myasthenic syndrome congenital myasthenic syndrome 9
1 gene
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1 of 1 corroborated by 2+ sources
MUSK(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Den hoed-de boer-voisin syndrome Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Boudin-mortier syndrome Congenital contractural arachnodactyly
1 gene
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1 of 1 corroborated by 2+ sources
NPR3(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 12 →
Bullous pyoderma gangrenosum Heart valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Caspase 8 deficiency Cerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.