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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gonadal dysgenesis Hydrops with lactic acidosis and sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hyperthermia Sickle cell anemia
1 gene
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1 of 1 corroborated by 2+ sources
GPX1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hypokalemia-hypomagnesemia Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
immunodeficiency 25 Scleroderma
1 gene
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1 of 1 corroborated by 2+ sources
CD247(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 25 →
Idiopathic steroid-resistant nephrotic syndrome inherited focal segmental glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Epithelial ovarian carcinoma Intellectual developmental disorder behavioral dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
PHF21A(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Intellectual developmental disorder growth seizures Mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ABCA2(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 235 →
Hereditary parkinson disease Intellectual developmental disorder language neurodegenerative
1 gene
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1 of 1 corroborated by 2+ sources
NR4A2(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Intellectual developmental disorder seizures movement Oral cavity carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PDE2A(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 1 →
Intermittent porphyria Sickle cell anemia
1 gene
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1 of 1 corroborated by 2+ sources
HMBS(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hypertriglyceridemia karyomegalic interstitial nephritis
1 gene
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1 of 1 corroborated by 2+ sources
FAN1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
LCA5-related retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
LCA5(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
leber congenital amaurosis 15 Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
TULP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Leber hereditary optic neuropathy leber-like hereditary optic neuropathy, autosomal recessive 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC30(7)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Diverticulitis Metaphyseal chondrodysplasia with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 373 →
1p31p32 microdeletion syndrome Multinodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
multiple self-healing squamous epithelioma Scleroderma
1 gene
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1 of 1 corroborated by 2+ sources
TGFBR1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 25 →
Cednik syndrome Oral cavity carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SNAP29(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Cerebellar ataxia with neuropathy and bilateral vestibular areflexia Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Cerebral dysgenesis-neuropathy-ichthyosis-palmoplantar keratoderma syndrome Oral cavity carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SNAP29(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
CERKL-related retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 7 →
Charcot-Marie-Tooth disease dominant intermediate E Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INF2(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
chondrodysplasia with joint dislocations, gpapp type Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Chromosome 2p16.3 deletion syndrome Internet addiction disorder
1 gene
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1 of 1 corroborated by 2+ sources
NRXN1(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 179 →
Chromosome 6q24-q25 deletion syndrome Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.