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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Biliary atresia Heart valve prolapse
2 genes
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SPP1(1), IL18(1)
0.034 0.069 1.54e-3 2.38e-3 ✓ sig. —
Ewing sarcoma Neuropathy, congenital hypomyelinating
1 gene
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1 of 1 corroborated by 2+ sources
EGR2(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Facioscapulohumeral muscular dystrophy Immunodeficiency-centromeric instability-facial anomalies syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3B(4)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Bronchus cancer Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA4(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Endometrial stromal sarcoma Miller-dieker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. Cluster 223 →
Endometrial stromal sarcoma Weaver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SUZ12(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Bilateral microphthalmos Vitamin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Choanal atresia syndrome Wiedemann-steiner syndrome
1 gene
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CHD7(1)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Amelogenesis imperfecta Tricho-dento-osseous syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLX3(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Night blindness, congenital stationary TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 151 →
Spondyloepimetaphyseal dysplasia Warburg-cinotti syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked cerebral adrenoleukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked hereditary sensory and autonomic neuropathy with deafness
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Focal dermal hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
PORCN(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 56 →
GPR179-related retinopathy Night blindness, congenital stationary
1 gene
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1 of 1 corroborated by 2+ sources
GPR179(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 151 →
GRM6-related retinopathy Night blindness, congenital stationary
1 gene
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1 of 1 corroborated by 2+ sources
GRM6(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 151 →
Anophthalmia/microphthalmia-esophageal atresia syndrome Growth hormone deficiency with pituitary anomalies
1 gene
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1 of 1 corroborated by 2+ sources
HESX1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amelogenesis imperfecta Atrial myxoma
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
autosomal dominant macrothrombocytopenia Oocyte maturation defect
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 211 →
Beukes hip dysplasia Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
UFSP2(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Cerebellar ataxia with hearing loss Ventricular remodeling
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.