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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Penile hypospadia Synpolydactyly
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
15q11.2 microdeletion syndrome Complex cortical dysplasia with other brain malformations
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 176 →
3-methylglutaconic aciduria Mitochondrial encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TIMM50(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Infertility Olmsted syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 242 →
Complex cortical dysplasia with other brain malformations lissencephaly spectrum disorders
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 176 →
Benign mucous membrane pemphigoid with ocular involvement Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Metaphyseal chondrodysplasia Metaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MMP13(6)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Insulin dependent diabetes mellitus secretory diarrhea syndrome Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cholestasis Metachromatic leukodystrophy
1 gene
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YARS1(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 22q11.2 microdeletion syndrome Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Circadian rhythm sleep disorder Pernicious anemia
1 gene
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CNTN5(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cleidocranial dysplasia Facial nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
SUPT3H(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cataract-multisystem syndrome Hoyeraal hreidarsson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 64 →
Cataract-multisystem syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
1 gene
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1 of 1 corroborated by 2+ sources
NOP10(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 64 →
Duodenitis Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Duodenitis
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Early onset epilepsy with developmental delay Familial adult myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →
Adult myoclonic epilepsy Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →
Bilirubin metabolism disease Dihydropyrimidine metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Developmental coordination disorder Discoid lupus erythematosus
1 gene
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OGG1(1)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Distal amyotrophy Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Dopamine beta-hydroxy­lase deficiency Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
DBH(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Duane retraction syndrome Duane-radial ray syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL4(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Elsahy-waters syndrome Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.