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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
GNPTAB-mucolipidosis Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
GNPTAB(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Gollop-wolfgang complex Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
BHLHA9(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
arthrogryposis multiplex congenita 3, myogenic type Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Autoimmune gastritis Gastritis
1 gene
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ATP4B(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 1 →
Autoinflammation with arthritis and dyskeratosis Keratitis
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
autosomal recessive severe congenital neutropenia due to G6PC3 deficiency Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
G6PC3(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Benign mesial temporal lobe epilepsy Febrile convulsion
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Bile duct neoplasms Cerebral arteriovenous malformations
1 gene
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1 of 1 corroborated by 2+ sources
EGFR(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Blepharophimosis intellectual disability syndrome Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
UBE3B(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Buschke-ollendorff syndrome Cerebral arteriovenous malformations
1 gene
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1 of 1 corroborated by 2+ sources
LEMD3(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Camptosynpolydactyly Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
BHLHA9(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Cataplexy Dysarthria
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
SEC61A1 deficiency Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
SEC61A1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Sialolithiasis Vesiculobullous skin disease
1 gene
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PRKN(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Sialolithiasis TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Sialolithiasis Wolcott-rallison syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Cerebral arteriovenous malformations sorsby fundus dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TIMP3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Spontaneous coronary artery dissection Venous thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 55 →
Dysarthria Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Combined oxidative phosphorylation defect Sialolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital central hypothyroidism Keratitis
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital merosin-deficient muscular dystrophy Congenital muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
2,8-dihydroxyadenine urolithiasis Mucopolysaccharidosis
1 gene
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APRT(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Acheiropody Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
LMBR1(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Acrocapitofemoral dysplasia Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
IHH(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 352 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.