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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Expressive language delay Gross motor development delay
1 gene
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KLF7(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 61 →
familial hyperaldosteronism type III Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ5(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Familial partial lipodystrophy Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CIDEC(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 71 →
Familial telangiectasia cancer syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATR(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Carcinogenesis Gestational trophoblastic disease
1 gene
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POU5F1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 3 →
Clinodactyly Glass syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Glucocorticoid receptor deficiency/resistance Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NR3C1(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Graves ophthalmopathy gray platelet syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NBEAL2(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 147 →
20p12.3 microdeletion syndrome Uremia
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Chorea
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
AKT2-related familial partial lipodystrophy Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Amish nemaline myopathy Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TNNT1(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Anovulation Dyslipidemias
1 gene
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1 of 1 corroborated by 2+ sources
NR5A2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 141 →
Congenital heart septal defect renpenning syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PQBP1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 364 →
Amnesia Retrograde amnesia
1 gene
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1 of 1 corroborated by 2+ sources
PREP(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 13 →
Hypoplastic left heart syndrome Right hypoplastic heart syndrome
1 gene
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TBX20(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Right ventricle hypoplasia Uremia
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly Satb2 associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Gross motor development delay Saul-wilson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COG4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Potassium deficiency Sebaceous gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LEF1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Seckel syndrome seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 101 →
Short stature spectrum Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ACAN(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 211 →
Sick sinus syndrome sick sinus syndrome 2, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
HCN4(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 4 →
Silverman-Handmaker type dyssegmental dysplasia Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
SMAD6-related disease Thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.