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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chondrodysplasia X-linked dominant chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
EBP(6)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Hodgkin disease X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 131 →
Bronchiectasis congenital disorder of glycosylation, type 2v
1 gene
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1 of 1 corroborated by 2+ sources
EDEM3(2)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. Cluster 95 →
Congenital hypoplasia of clavicle Micrognathism
1 gene
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LEMD2(1)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital hypotrichosis with juvenile macular dystrophy Hypotrichosis
1 gene
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1 of 1 corroborated by 2+ sources
CDH3(3)
0.056 1.000 1.10e-3 1.83e-3 ✓ sig. —
Congenital diaphragmatic hernia Vesicoureteral reflux
2 genes
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1 of 2 corroborated by 2+ sources
ZFPM2(2), NIPBL(1)
0.035 0.100 1.10e-3 1.83e-3 ✓ sig. —
Cryptorchidism Vesicoureteral reflux
2 genes
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KAT6B(1), NIPBL(1)
0.035 0.100 1.10e-3 1.83e-3 ✓ sig. —
Curling ulcer Three-vessel coronary artery disease
1 gene
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ABO(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
De lange syndrome Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAD21(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Rickets Trifunctional protein deficiency
1 gene
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HADHB(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Deafness, aminoglycoside-induced Wolfram syndrome
1 gene
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ND1(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Bone osteosarcoma Woolly hair
1 gene
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1 of 1 corroborated by 2+ sources
RB1(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Bouillaud’s disease Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Laryngeal disease Leukocyte disorders
1 gene
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1 of 1 corroborated by 2+ sources
PLG(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 155 →
Laryngeal disease Vissers-bodmer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IPO8(5)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SKI(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Congenital respiratory system anomaly
1 gene
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TGFB2(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(4)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital hypoplasia of lung De lange syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NIPBL(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Atrial standstill Ductus arteriosus, patent
1 gene
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1 of 1 corroborated by 2+ sources
NPPA(4)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
46, xy disorder of sex development 46,xx ovotesticular disorder of sex development
1 gene
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1 of 1 corroborated by 2+ sources
NR5A1(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 38 →
46, xy disorder of sex development Disorders of sex development
1 gene
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1 of 1 corroborated by 2+ sources
LHCGR(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Angiokeratoma Cerebral cavernous malformation
1 gene
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1 of 1 corroborated by 2+ sources
KRIT1(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 308 →
Benign infantile epilepsy familial sleep-related hypermotor epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.