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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dental enamel hypoplasia Proximal renal tubular acidosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A4(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia pycnodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Pyoderma gangrenosum Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital anomaly of limb radioulnar synostosis with amegakaryocytic thrombocytopenia 1
1 gene
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1 of 1 corroborated by 2+ sources
HOXA11(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
myopathy caused by variation in CRPPA Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRPPA(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in FKRP Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in FKTN Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in GMPPB Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GMPPB(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in POMGNT1 Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in POMGNT2 Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT2(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in POMT1 Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POMT1(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
myopathy caused by variation in POMT2 Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POMT2(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
Nasal obstruction Seasonal affective disorder
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidney syndrome Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Microform holoprosencephaly neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures
1 gene
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1 of 1 corroborated by 2+ sources
DLL1(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 96 →
neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan Walker-warburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 14 →
norrie disease Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Hydrops fetalis obsolete PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Distal arthrogryposis Osteofibrous dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MET(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema Osteofibrous dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MET(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Loeys-dietz syndrome loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 12 →
lymphatic malformation 1 Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema Lymphedema-distichiasis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.