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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hydrops fetalis immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Ichthyosis immunodeficiency 63 with lymphoproliferation and autoimmunity
1 gene
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1 of 1 corroborated by 2+ sources
IL2RB(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
IMPDH1-related retinopathy Thyroiditis
1 gene
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1 of 1 corroborated by 2+ sources
IMPDH1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Intellectual developmental disorder seizures cerebellar Seasonal affective disorder
1 gene
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1 of 1 corroborated by 2+ sources
RORA(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia Intellectual developmental disorder with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Intermittent explosive disorder Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
interstitial lung disease due to ABCA3 deficiency Loeys-dietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
legius syndrome Male infertility spermatogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
SPRED1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Bile duct neoplasms Gliosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
EGFR(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Bohring-opitz-like syndrome Distal arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
KLHL7(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast cyst Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1D(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast neoplasms Coloboma, cleft lip-palate and mental retardation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
YAP1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 401 →
Breast neoplasms Uveal coloboma-cleft lip and palate-intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
YAP1(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 401 →
Autoimmune uveitis Breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CXCL8(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast neoplasms melanoma, cutaneous malignant, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
CDK4(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Brunner syndrome Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Bullous pyoderma gangrenosum Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Cardiac-urogenital syndrome Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Congenital total cataract
1 gene
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LSS(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
20p12.3 microdeletion syndrome Patent ductus arteriosus
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
22q11 deletion syndrome Microform holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 96 →
Aldosterone-producing adenoma Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1D(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Alveolar capillary dysplasia Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Anomalous pulmonary venous Patent ductus arteriosus
1 gene
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PSMC3(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Anterior cruciate ligament injury Catalepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNR2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.