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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dna repair-deficiency disorders Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune pancreatitis Duodenitis
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Duodenitis Tongue cancer
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Hereditary chronic pancreatitis Pancreatic trypsinogen deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRSS1(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Peeling skin syndrome with leukonychia and acral punctate keratoses Pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
CAST(6)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Post-operative myocardial infarction Urologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FHIT(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Acroosteolysis Primary familial brain calcification
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Adult myoclonic epilepsy Cri-du-chat syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTNND2(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Amed syndrome Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
ALDH2(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Amelocerebrohypohidrotic syndrome Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 365 →
Becker generalized myotonia Metachromatic leukodystrophy
1 gene
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CLCN1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Thoracic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 120 →
Congenital nystagmus Usher syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
MYO7A(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Congenital sensorineural hearing loss Usher syndrome type 2
1 gene
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1 of 1 corroborated by 2+ sources
USH2A(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Pemphigus Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Frontotemporal dementia with motor neuron disease Welander distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Wilson-turner syndrome X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
LAS1L(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Charcot-marie-tooth disease, x-linked X-linked progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
GJB1(8)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Penile hypospadia Yunis-varon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 103 →
Accessory skin tag Complex spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Congenital bilateral absence of vas deferens Hereditary chronic pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(6)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Congenital cataract facial dysmorphism neuropathy syndrome Posterior polar cataract
1 gene
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1 of 1 corroborated by 2+ sources
GJA3(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 43 →
hereditary nonpolyposis colon cancer Lig4 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
XRCC4(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune pancreatitis Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Liver cancer Tongue cancer
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.