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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Apolipoprotein b hypobetalipoproteinemia Benign mucous membrane pemphigoid with ocular involvement
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Apolipoprotein b hypobetalipoproteinemia Bouillaud’s disease
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Apolipoprotein b hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Asymmetric septal hypertrophy Concentric hypertrophic cardiomyopathy
1 gene
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MYBPC3(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Concentric hypertrophic cardiomyopathy Paroxysmal atrial fibrillation
1 gene
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MYBPC3(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Activated pi3k-delta syndrome Concussion
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Concussion Retinal vasculopathy with cerebral leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Congenital cataract hypertrophic cardiomyopathy mitochondrial myopathy syndrome Trichohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGK(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 412 →
Congenital communicating hydrocephalus Cryptospermia
1 gene
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1 of 1 corroborated by 2+ sources
TRIM71(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 293 →
Congenital lactic acidosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Congenital mirror movements Partial agenesis of corpus callosum
1 gene
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1 of 1 corroborated by 2+ sources
DCC(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Congenital vertebral-cardiac-renal anomalies syndrome Smith-lemli-opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Coronary vasospasm Resistant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Coronary vasospasm Intestinal perforation
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Dermatitis herpetiformis Pregnancy disorder
1 gene
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TNF(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 300 →
Esophageal varices Vipoma
1 gene
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1 of 1 corroborated by 2+ sources
SST(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 270 →
Extrinsic allergic alveolitis Spinal cord compression
1 gene
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TNF(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 300 →
Fatty acid metabolism disorder Peroxisomal disorder
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B4(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 99 →
Focal epilepsy Roifman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CLASP1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Desmoid tumor Gastrointestinal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
APC(6)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 41 →
Esophageal achalasia Glucocorticoid deficiency with achalasia
1 gene
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1 of 1 corroborated by 2+ sources
AAAS(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Cerebral artery occlusion Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
ADCYAP1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Churg-strauss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Churg-strauss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Churg-strauss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.