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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Central hypothyroidism Imperforate anus
1 gene
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ROBO1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Central hypothyroidism Pituitary hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ROBO1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Central retinal vein occlusion Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2A1 Congenital joint contractures
1 gene
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1 of 1 corroborated by 2+ sources
KIF1B(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4C Congenital joint contractures
1 gene
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1 of 1 corroborated by 2+ sources
SH3TC2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Charge syndrome Intellectual developmental disorder dysmorphic cardiac short stature
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 224 →
Cholestasis-pigmentary retinopathy-cleft palate syndrome Imperforate anus
1 gene
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1 of 1 corroborated by 2+ sources
MED12(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Chondrosarcoma Collagenopathy
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chondrosarcoma Coxa plana
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chondrosarcoma Czech dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chondrosarcoma Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Chromosome 22q11.2 deletion syndrome Pulmonary alveolar proteinosis
1 gene
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ABCA3(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
ciliary dyskinesia, primary, 39 Congenital arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 18 →
ciliopathy-IFT74 Male infertility large polyploid spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Coats disease Exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NDP(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cobalamin metabolism disorder Intracellular cobalamin metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
MMADHC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Chondrosarcoma exostoses, multiple, type 1
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Exudative vitreoretinopathy Intellectual developmental disorder dysmorphic ocular microcephaly peripheral
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Fabry disease renal tubular dysgenesis - ACE
1 gene
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1 of 1 corroborated by 2+ sources
ACE(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 195 →
Fabry disease krabbe disease
1 gene
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1 of 1 corroborated by 2+ sources
GALC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 195 →
Fabry disease Peptic esophagitis
1 gene
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VDR(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Disseminated intravascular coagulation Factor vii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F7(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Factor xi deficiency Thromboembolic pulmonary hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F11(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital joint contractures familial hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
SCN1A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
FAS-related autoimmune lymphoproliferative immune disorder Splenic disease
1 gene
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1 of 1 corroborated by 2+ sources
FAS(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 155 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.