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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Carcinoid syndrome Paraganglioma
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
Carcinoid syndrome Pheochromocytoma/paraganglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
Cataplexy Niemann-pick disease
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(8)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
HAVCR2-related cancer predisposition Hemophagocytic lymphohistiocytosis
1 gene
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1 of 1 corroborated by 2+ sources
HAVCR2(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemoglobin high altitude adaptation Secondary polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
EGLN1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Reducing body myopathy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Uruguay faciocardio-musculoskeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis X-linked scapuloperoneal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hereditary chronic pancreatitis neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hereditary leiomyomatosis and renal cell cancer Pheochromocytoma/paraganglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FH(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
CHEK2-related cancer predisposition hereditary nonpolyposis colon cancer
1 gene
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CHEK2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hereditary nonpolyposis colon cancer Small cell ovary carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 120 →
hereditary nonpolyposis colon cancer thrombocytopenia 10
1 gene
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PTPRJ(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 120 →
Hydrops with lactic acidosis and sideroblastic anemia Xx gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 336 →
Hyperammonemia systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Hyperammonemia ornithine carbamoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OTC(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Hyperesthesia Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
KNG1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 250 →
Hyperammonemia Hyperinsulinism-hyperammonemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
hypopigmentation, organomegaly, and delayed myelination and development Osteosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN7(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bare lymphocyte syndrome hypoproteinemia, hypercatabolic
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Rosacea Toxic epidermal necrolysis
2 genes
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IKZF1(1), SPMIP7(1)
0.040 0.143 5.02e-4 1.06e-3 ✓ sig. —
Testicular carcinoma Transient neonatal diabetes mellitus
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(3), GATA4(3)
0.029 0.222 5.28e-4 1.08e-3 ✓ sig. —
Testicular germ cell tumor Transient neonatal diabetes mellitus
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(3), GATA4(3)
0.029 0.222 5.28e-4 1.08e-3 ✓ sig. —
Cone rod dystrophy and hearing loss Retinitis pigmentosa
2 genes
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2 of 2 corroborated by 2+ sources
CEP78(5), CEP250(6)
0.006 1.000 5.33e-4 1.09e-3 ✓ sig. —
Bradyopsia Retinitis pigmentosa
2 genes
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2 of 2 corroborated by 2+ sources
RGS9(4), RGS9BP(2)
0.006 1.000 5.33e-4 1.09e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.