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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypochromic microcytic anemia Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Hypochromic microcytic anemia Hypochromic sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 227 →
hypomagnesemia, seizures, and intellectual disability 1 Magnesium metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNNM2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 341 →
hypopigmentation-punctate palmoplantar keratoderma syndrome Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →
IFIH1-related type 1 interferonopathy Littles disease
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency IKBKG-related immunodeficiency with or without ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
IKBKG(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 87 →
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome Peritoneal fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome inflammatory bowel disease, immunodeficiency, and encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection-lymphopenia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 264 →
Immune system disorder pulmonary veno-occlusive disease and/or pulmonary capillary haemangiomatosis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK4(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 255 →
Eye pain Immune system disorder
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immune system disorder Rhabdomyoma
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immune system disorder Sacroiliitis
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
immunodeficiency 37 Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome immunodeficiency 57
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 264 →
Autoimmune hemolytic anemia immunodeficiency 78 with autoimmunity and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Immunodeficiency-centromeric instability-facial anomalies syndrome immunodeficiency-centromeric instability-facial anomalies syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CDCA7(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 335 →
Immunodeficiency-centromeric instability-facial anomalies syndrome immunodeficiency-centromeric instability-facial anomalies syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3B(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 335 →
Immunodeficiency-centromeric instability-facial anomalies syndrome immunodeficiency-centromeric instability-facial anomalies syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HELLS(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 335 →
Immunodeficiency-centromeric instability-facial anomalies syndrome immunodeficiency-centromeric instability-facial anomalies syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB24(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 335 →
IMPG1-related dominant retinopathy Vitelliform macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 303 →
IMPG1-related recessive retinopathy Vitelliform macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 303 →
IMPG2-related recessive retinopathy Vitelliform macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 303 →
inclusion body myopathy with early-onset paget disease with or without frontotemporal dementia 2 Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency incontinentia pigmenti
1 gene
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1 of 1 corroborated by 2+ sources
IKBKG(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 87 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.