Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Magnesium metabolism disorder renal hypomagnesemia 3
1 gene
Show details
1 of 1 corroborated by 2+ sources
CLDN16(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 341 →
Hyperuricemic nephropathy renal tubular dysgenesis of genetic origin
1 gene
Show details
1 of 1 corroborated by 2+ sources
REN(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
GUCY2D-related dominant retinopathy Retinal cone dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GUCY2D(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
GUCY2D-related recessive retinopathy Retinal cone dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GUCY2D(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Chilblain lupus erythematosus retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations
1 gene
Show details
1 of 1 corroborated by 2+ sources
TREX1(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 150 →
Retinoschisis Temperature-sensitive oculocutaneous albinism
1 gene
Show details
1 of 1 corroborated by 2+ sources
TYR(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Adrenocortical carcinoma Sapho syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 3 →
Choroid plexus carcinoma Sapho syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 3 →
Choroid plexus papilloma Sapho syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TP53(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 3 →
Refractory anemia Sapho syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TNF(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ambiguous genitalia Schaaf-yang syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
MAGEL2(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 35 →
Schilder disease Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
1 gene
Show details
1 of 1 corroborated by 2+ sources
POLG(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 97 →
Preaxial polydactyly with upper back hypertrichosis Schizencephaly
1 gene
Show details
1 of 1 corroborated by 2+ sources
SHH(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 232 →
Schizencephaly Skeletal system disorder
1 gene
Show details
SHH(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 232 →
holoprosencephaly 3 Schizencephaly
1 gene
Show details
1 of 1 corroborated by 2+ sources
SHH(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 232 →
Familial hematuria-retinal arteriolar tortuosity-contractures syndrome Schizencephaly
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL4A1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Colpocephaly Schizencephaly
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL4A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
SCN4A-related myopathy, autosomal recessive Sotos syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SCN4A(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 163 →
Hyperuricemic nephropathy SEC61A1 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
SEC61A1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 23 →
SETD2-related microcephaly-severe intellectual disability-multiple congenital anomalies syndrome Sotos syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SETD2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
SETD2-related neurodevelopmental disorder without or with macrocephaly/overgrowth Sotos syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SETD2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Sheldon-hall syndrome TPM2-related myopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
TPM2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 202 →
sorsby fundus dystrophy Urinary bladder diseases
1 gene
Show details
1 of 1 corroborated by 2+ sources
TIMP3(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 112 →
46,xx sex reversal SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
SOX3(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
dyskeratosis congenita, autosomal dominant 2 Telomere syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
TERT(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.