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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Caroli disease Liver cyst
1 gene
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1 of 1 corroborated by 2+ sources
PKD1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Caroli disease Congenital hypoplasia of aortic arch
1 gene
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1 of 1 corroborated by 2+ sources
PKHD1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 157 →
Caroli disease Periportal fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
PKHD1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 157 →
Carotid intima-media thickness Chronobiology disorder
1 gene
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1 of 1 corroborated by 2+ sources
PPARG(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
cataract 50 with or without glaucoma Mulibrey nanism
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 109 →
Congenital myotonia Smith-lemli-opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CLCN1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital pain insensitivity Congenital sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NGF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital secretory diarrhea Duodenal atresia
1 gene
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GUCY2C(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 172 →
Congenital sensory neuropathy Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
NGF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Corneal edema pitt-hopkins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 222 →
Coronary medial sclerosis of infancy Crystal arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →
Cortical dysgenesis with pontocerebellar hypoplasia Tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cortical dysplasia lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 275 →
Cramp-fasciculation syndrome Genetic peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Cramp-fasciculation syndrome Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Craniofrontonasal dysplasia X-linked intellectual disability-cerebellar hypoplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OPHN1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 117 →
Cryopyrin-associated periodic syndrome Infantile neurological cutaneous and articular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 192 →
Crystal arthropathy hypopigmentation-punctate palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →
CYP1B1-related glaucoma with or without anterior segment dysgenesis Primary congenital glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
CYP1B1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic oligoastrocytoma D-2-hydroxyglutaric aciduria
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
D-2-hydroxyglutaric aciduria Gemistocytic astrocytoma
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
D-bifunctional protein deficiency Peroxisomal disorder
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B4(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
Dacryocystitis Multifocal osteomyelitis
1 gene
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IL1RN(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 216 →
Deaf blind hypopigmentation syndrome Waardenburg-shah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Deafness with congenital heart defects and posterior embryotoxon Middle aortic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
JAG1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.