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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Homocystinuria with megaloblastic anemia methylcobalamin deficiency type cblG
1 gene
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1 of 1 corroborated by 2+ sources
MTR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 121 →
Houge janssens syndrome Intellectual developmental disorder growth behavioral
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5D(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Houge janssens syndrome Intellectual developmental disorder macrocephaly hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R5D(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Hyper-igd syndrome Hyper-immunoglobulin d syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MVK(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 316 →
Hyper-immunoglobulin d syndrome methylmalonic aciduria, cblb type
1 gene
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1 of 1 corroborated by 2+ sources
MMAB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 316 →
Hyper-immunoglobulin m syndrome X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 131 →
Hyperexplexia hereditary sulfite oxidase deficiency due to molybdenum cofactor deficiency type C
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 379 →
Hypergammaglobulinemia Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
hyperinsulinism due to glucokinase deficiency Intestinal disaccharide malabsorption
1 gene
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1 of 1 corroborated by 2+ sources
GCK(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Hypochromic anemia Microcytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 227 →
hypogonadotropic hypogonadism 1 with or without anosmia Micropenis
1 gene
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1 of 1 corroborated by 2+ sources
ANOS1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 103 →
hypoproteinemia, hypercatabolic Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
Arginine-glycine amidinotransferase deficiency De toni-debre-fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
Arginine-glycine amidinotransferase deficiency Fanconi renotubular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
arterial calcification, generalized, of infancy, 1 Crystal arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →
Arteriovenous hemangioma Bockenheimer syndrome
1 gene
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TEK(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 261 →
Arteriovenous hemangioma Mucocutaneous venous malformations
1 gene
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1 of 1 corroborated by 2+ sources
TEK(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 261 →
Arteritis Central retinal vein occlusion
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 314 →
Arteritis hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 314 →
Arthrogryposis with oculomotor limitation and retinal anomalies Gorlin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 203 →
Asymmetric septal hypertrophy Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy Biventricular noncompaction cardiomyopathy
1 gene
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MYH7(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy dilated cardiomyopathy 1S
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Ataxia with polyneuropathy Mitochondrial myopathy with sideroblastic anemia
1 gene
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ATP6(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.