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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anodontia craniofacial dysplasia - osteopenia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRX5(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia Tooth and nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia Witkop syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia tooth agenesis, selective, 1
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anonychia Campomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Camptomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Cooks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia isolated Pierre-Robin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Dominant dystrophic epidermolysis bullosa with absence of skin
1 gene
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1 of 1 corroborated by 2+ sources
COL7A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
anterior segment dysgenesis 4 Rieger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 253 →
Anti-glomerular basement membrane disease Autoimmune pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →
Anti-glomerular basement membrane disease Heerfordt syndrome
1 gene
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0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →
Anti-glomerular basement membrane disease autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anti-glomerular basement membrane disease Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →
Anti-nmda receptor encephalitis IFIH1-related type 1 interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anti-nmda receptor encephalitis Carbamazepine hypersensitivity
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 277 →
Anti-nmda receptor encephalitis Thrombophlebitis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 277 →
Antisocial personality disorder Brunner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 57 →
Antisocial personality disorder Separation anxiety disorder
1 gene
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DRD4(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 57 →
Antisocial personality disorder Colchicine resistance
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 57 →
Apolipoprotein a-i amyloidosis Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Aprosencephaly methylcobalamin deficiency type cblE
1 gene
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1 of 1 corroborated by 2+ sources
MTRR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 121 →
Arginine vasopressin deficiency Neurogenic diabetes insipidus
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Arginine vasopressin deficiency Diabetes insipidus
1 gene
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1 of 1 corroborated by 2+ sources
AVP(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Arginine vasopressin deficiency Nephrogenic diabetes insipidus
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.