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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Diastolic heart failure Retinopathy background
1 gene
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1 of 1 corroborated by 2+ sources
ABCA4(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Congenital scoliosis Dilatation of pulmonary artery
1 gene
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FBN1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 52 →
Distal amyotrophy Lysine metabolism disorder
1 gene
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DHTKD1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Dubowitz syndrome Lig4 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Dystrophic epidermolysis bullosa Nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
COL7A1(8)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
Dystrophic epidermolysis bullosa Hallopeau siemens disease
1 gene
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1 of 1 corroborated by 2+ sources
COL7A1(8)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
Ectopic rhythm Paroxysmal ventricular fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 129 →
Elsahy-waters syndrome Teebi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDH11(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Encephalocraniocutaneous lipomatosis Toriello-carey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
nevoid basal cell carcinoma syndrome Tessier facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 203 →
Odontochondrodysplasia 2 with hearing loss and diabetes Testis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Aniridia-cerebellar ataxia-intellectual disability syndrome Optic nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 74 →
Congenital aniridia Optic nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Craniopharyngioma Osteopathia striata with cranial sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 104 →
Osteopathia striata with cranial sclerosis Vascular calcification
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 104 →
Camurati-engelmann syndrome Osteopetrosis and infantile neuroaxonal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Branchiootic syndrome Otofaciocervical syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EYA1(6)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 145 →
Arteriovenous malformations Encephalocraniocutaneous lipomatosis
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Arteriovenous malformations Toriello-carey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 40 →
Arteriovenous malformations Port-wine stain
1 gene
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1 of 1 corroborated by 2+ sources
RASA1(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 40 →
Arthralgia Mevalonate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 316 →
Atrioventricular excitation abnormality Keppen-lubinsky syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 318 →
Auditory perceptual disorder Congenital exomphalos
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA7(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Autoimmune pancreatitis Tongue cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Juvenile hyperuricemic nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
UMOD(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.