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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chromosome 8p23.1 monosomy Renal cysts and diabetes syndrome
1 gene
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GATA4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Retinal vasculopathy with cerebral leukodystrophy Type i interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 150 →
Retinal vasculopathy with cerebral leukodystrophy retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 150 →
Bone osteosarcoma Retinoblastoma
1 gene
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1 of 1 corroborated by 2+ sources
RB1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 3 →
Rh deficiency syndrome Rh-null, regulator type
1 gene
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1 of 1 corroborated by 2+ sources
RHAG(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 302 →
Rh deficiency syndrome Rh-null, amorph type
1 gene
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1 of 1 corroborated by 2+ sources
RHCE(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 302 →
Riboflavin deficiency Riboflavin transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Right atrial isomerism Right isomerism
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 113 →
Right ventricular cardiomyopathy Severe lipodystrophic laminopathy
1 gene
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1 of 1 corroborated by 2+ sources
LMNA(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Rigid spine muscular dystrophy Zebra body myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ACTA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Rigid spine muscular dystrophy SELENON-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SELENON(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Achondroplasia Saethre-chotzen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Lacrimoauriculodentodigital syndrome Salivary gland agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FGF10(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Ladd syndrome Salivary gland agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FGF10(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Schimmelpenning-feuerstein-mims syndrome Splenic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HRAS(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 18 →
Schwartz-jampel syndrome Silverman-Handmaker type dyssegmental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 350 →
Multiminicore myopathy SELENON-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SELENON(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Achondroplasia Seminoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Camptodactyly, tall stature, and hearing loss syndrome Seminoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Catshl syndrome Seminoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Crouzon syndrome with acanthosis nigricans Seminoma
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Congenital pectus carinatum Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Coronary artery dissection Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
silver-russell syndrome 5 Well-differentiated liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 342 →
Skeletal system disease Skeletal system disorder
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.