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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hereditary xerocytosis obsolete PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO1(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
holoprosencephaly 12 with or without pancreatic agenesis Vissers-bodmer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNOT1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 144 →
holoprosencephaly 3 Partial agenesis of corpus callosum
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 232 →
holoprosencephaly 3 Skeletal system disease
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Homocystinuria Malnutrition
1 gene
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1 of 1 corroborated by 2+ sources
CBS(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
hyper-IgE recurrent infection syndrome 1, autosomal dominant Hyper-immunoglobulin e syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 205 →
Hyper-ige syndrome Hyper-immunoglobulin e syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 205 →
Hyper-immunoglobulin e syndrome Lymphoproliferative disorder of natural killer cells
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 205 →
Hyper-immunoglobulin e syndrome STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 205 →
Hypercalcemic tumoral calcinosis Intracranial embolism
1 gene
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KL(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 407 →
hypercholesterolemia, autosomal dominant, 3 Hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
PCSK9(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
hypercholesterolemia, autosomal dominant, type B Hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOB(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
Hyperkalemic periodic paralysis Myotonia
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 163 →
Hyperkalemic periodic paralysis Potassium-aggravated myotonia
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 163 →
Hyperkalemic periodic paralysis SCN4A-related myopathy, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 163 →
hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase S-adenosylhomocysteine hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AHCY(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase Sulfur amino acid metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
AHCY(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Hyperoxia Urinary bladder calculi
1 gene
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1 of 1 corroborated by 2+ sources
AHR(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 191 →
Hyperoxia Patent ductus venosus
1 gene
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1 of 1 corroborated by 2+ sources
AHR(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 191 →
Hyperoxia Ureteral neoplasms
1 gene
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AHR(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 191 →
Hyperoxia TNF receptor 1-associated periodic fever syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hyperphenylalaninemia Phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hyperphenylalaninemia Tetrahydrobiopterin-responsive phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hyperphosphatemic tumoral calcinosis Intracranial embolism
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 407 →
Dystransthyretinemic euthyroidal hyperthyroxinemia Hyperthyroxinemia
1 gene
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1 of 1 corroborated by 2+ sources
TTR(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 182 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.