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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Choreatic disease Dyskinesia with orofacial involvement
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Choreatic disease Dyskinesia, familial, with facial myokymia
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Choreatic disease NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Choroid diseases Panuveitis
1 gene
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IL10(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 107 →
Choroid plexus carcinoma Chromosome 17 deletion
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 3 →
Choroid plexus carcinoma Vulvar lichen sclerosus
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 3 →
Choroid plexus papilloma Chromosome 17 deletion
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 3 →
Choroid plexus papilloma Vulvar lichen sclerosus
1 gene
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1 of 1 corroborated by 2+ sources
TP53(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 3 →
Choroidal dystrophy PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Choroidal dystrophy GUCY2D-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Choroidal dystrophy GUCY2D-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Choroidal sclerosis PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Choroidal sclerosis GUCY2D-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Choroidal sclerosis GUCY2D-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 45 →
Chromodomain helicase dna binding protein 8 overgrowth syndrome Intellectual developmental disorder autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 279 →
Chromophobe renal cell carcinoma Hepatic adenoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromophobe renal cell carcinoma Insulin resistant diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 15q24 deletion syndrome Witteveen-kolk syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 343 →
Chromosome 16p11.2 deletion syndrome interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 16p11.2 deletion syndrome Chromosome 16p11.2 microdeletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 17 deletion koolen-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 17q23.1-q23.2 deletion syndrome Cryohydrocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 124 →
Chromosome 17q23.1-q23.2 duplication syndrome Patellar aplasia
1 gene
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TBX4(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 24 →
Chromosome 1q21.1 deletion syndrome Congenital sclerocornea
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 22q11.2 microduplication syndrome Common arterial trunk with aortic dominance
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 283 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.