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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Antibody deficiency immunodeficiency, common variable, 3
1 gene
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1 of 1 corroborated by 2+ sources
CD19(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Aplasia cutis-enamel dysplasia syndrome Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Aplasia of lacrimal and salivary glands Salivary gland agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FGF10(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Apolipoprotein a-ii amyloidosis Apolipoprotein a-ii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
APOA2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Arginine vasopressin deficiency Hereditary arginine vasopressin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AVP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
IKBKG-related immunodeficiency with or without ectodermal dysplasia incontinentia pigmenti
1 gene
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IKBKG(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 87 →
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection-lymphopenia syndrome immunodeficiency 57
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 264 →
immunodeficiency 11b with atopic dermatitis severe combined immunodeficiency due to CARD11 deficiency
1 gene
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CARD11(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 327 →
immunodeficiency 14 immunodeficiency 14b, autosomal recessive
1 gene
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PIK3CD(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 181 →
immunodeficiency 15a severe combined immunodeficiency due to IKK2 deficiency
1 gene
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IKBKB(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 31b Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency
1 gene
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STAT1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 37 Mucosa-associated lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 61 X-linked common variable immunodeficiency phenotype due to sh3kbp1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia
1 gene
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RAC2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia neutrophil immunodeficiency syndrome
1 gene
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RAC2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia neutrophil immunodeficiency syndrome
1 gene
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RAC2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
immunodeficiency due to CD25 deficiency Interleukin 2 receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 394 →
IMPG1-related dominant retinopathy IMPG1-related recessive retinopathy
1 gene
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IMPG1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 303 →
infantile convulsions and choreoathetosis Paroxysmal dystonia
1 gene
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1 of 1 corroborated by 2+ sources
PRRT2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 58 →
inflammatory bowel disease, immunodeficiency, and encephalopathy Peritoneal fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Insulin-resistant diabetes mellitus with acanthosis nigricans Type a insulin resistance syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INSR(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Intellectual developmental disorder cataracts myopathy primrose syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB20(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Intellectual developmental disorder dysmorphic cardiac short stature Verheij syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 224 →
Intellectual developmental disorder dysmorphic skeletal Intellectual developmental disorder dysmorphic speech skeletal
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Intellectual developmental disorder dysmorphic skeletal hair Intellectual developmental disorder speech dysmorphic t-cell
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.