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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Carotid artery thrombosis Platelet disorder
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(2), STXBP2(2)
0.111 0.333 9.85e-6 4.88e-5 ✓ sig. Cluster 33 →
Basal ganglia disease Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.111 0.333 9.85e-6 4.88e-5 ✓ sig. —
Generalized epilepsy with febrile seizures plus Hemiplegic migraine
2 genes
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2 of 2 corroborated by 2+ sources
SCN1A(8), PRRT2(2)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Congenital fibrosis of extraocular muscles Congenital ptosis
2 genes
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1 of 2 corroborated by 2+ sources
COL25A1(2), MYH10(1)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Catalepsy Constipation
2 genes
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2 of 2 corroborated by 2+ sources
GCG(2), POMC(2)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Congenital hemivertebra Patent ductus arteriosus
2 genes
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INPP5E(1), LSM1(1)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Retinoschisis Rett syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CDKL5(4), RS1(4)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Choanal atresia syndrome Male infertility spermatogenesis disorder
2 genes
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1 of 2 corroborated by 2+ sources
KMT2D(4), CHD7(1)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Angioedema Thromboembolism
3 genes
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2 of 3 corroborated by 2+ sources
PLAT(1), F5(2), F12(3)
0.045 0.250 1.03e-5 5.11e-5 ✓ sig. —
Angioedema Lipoma
3 genes
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DCLK1(1), SLC19A2(1), F5(1)
0.045 0.250 1.03e-5 5.11e-5 ✓ sig. —
Hereditary hearing loss Usher syndrome type 1
2 genes
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2 of 2 corroborated by 2+ sources
MYO7A(2), USH1C(2)
0.039 1.000 1.03e-5 5.11e-5 ✓ sig. —
Malignant peripheral nerve sheath tumor Small vessel stroke
2 genes
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2 of 2 corroborated by 2+ sources
SH3PXD2A(2), HTRA1(2)
0.039 1.000 1.03e-5 5.11e-5 ✓ sig. Cluster 403 →
Malignant triton tumor Small vessel stroke
2 genes
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2 of 2 corroborated by 2+ sources
SH3PXD2A(2), HTRA1(2)
0.039 1.000 1.03e-5 5.11e-5 ✓ sig. Cluster 403 →
Anxiety disorder Dyslexia
8 genes
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5 of 8 corroborated by 2+ sources
APOE(2), EPHA4(1), FOXP2(2), MAPT(3), MARK2(1), STK24(1), DRD4(2), SLC6A3(2)
0.032 0.072 1.04e-5 5.16e-5 ✓ sig. —
Angelman syndrome Prader-willi syndrome
2 genes
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2 of 2 corroborated by 2+ sources
OCA2(2), SNRPN(6)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Charcot-marie-tooth disease, x-linked Deafness, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
PRPS1(6), AIFM1(6)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Eye disorder Mucositis
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), MTHFR(2)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Brain atrophy Niemann-pick disease
2 genes
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1 of 2 corroborated by 2+ sources
ACYP1(1), NPC2(8)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Crest syndrome Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.083 0.500 1.06e-5 5.23e-5 ✓ sig. —
Muscular dystrophy Sarcoglycanopathies
2 genes
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1 of 2 corroborated by 2+ sources
SGCA(2), SGCG(1)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. Cluster 14 →
Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia Severe combined immunodeficiency
2 genes
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1 of 2 corroborated by 2+ sources
ZBTB25(1), MTHFD1(5)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
Partial adenosine deaminase deficiency Severe combined immunodeficiency
2 genes
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1 of 2 corroborated by 2+ sources
PKIG(1), ADA(7)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
immunodeficiency 104 Severe combined immunodeficiency
2 genes
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2 of 2 corroborated by 2+ sources
IL7R(3), PTPRC(2)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
Amphetamine or sympathomimetic abuse Internet addiction disorder
4 genes
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4 of 4 corroborated by 2+ sources
COMT(3), PRKG1(3), DRD4(3), NRG1(3)
0.039 0.143 1.08e-5 5.32e-5 ✓ sig. —
Anhedonia Dyskinesia
3 genes
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1 of 3 corroborated by 2+ sources
COMT(1), ATP1A3(1), DRD2(2)
0.060 0.115 1.08e-5 5.33e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.