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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
immunodeficiency, common variable, 5 Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(2)
0.001 1.000 1.27e-1 1.28e-1 —
Major depressive disorder Vibratory urticaria
1 gene
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1 of 1 corroborated by 2+ sources
ADGRE2(6)
0.001 1.000 1.27e-1 1.28e-1 Cluster 2 →
Major depressive disorder TRIP11-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TRIP11(2)
0.001 1.000 1.27e-1 1.28e-1 —
Major depressive disorder Zinc deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A2(4)
0.001 1.000 1.27e-1 1.28e-1 Cluster 2 →
Major depressive disorder Wernicke encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TKT(3)
0.001 1.000 1.27e-1 1.28e-1 —
Major depressive disorder Yoon-bellen neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OGDHL(3)
0.001 1.000 1.27e-1 1.28e-1 —
ciliary dyskinesia, primary, 45 Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
TTC12(2)
0.001 1.000 1.27e-1 1.28e-1 —
Cayman type cerebellar ataxia Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
ATCAY(2)
0.001 1.000 1.27e-1 1.28e-1 —
chondrodysplasia with joint dislocations, gpapp type Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(2)
0.001 1.000 1.27e-1 1.28e-1 —
Color vision deficiency White spongue nevus
1 gene
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1 of 1 corroborated by 2+ sources
KRT13(5)
0.001 0.500 1.22e-1 1.23e-1 —
Nephronophthisis-like nephropathy Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(4)
0.001 0.500 1.21e-1 1.22e-1 —
Neurodevelopmental disorder Ververi-brady syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SEPHS1(3)
0.001 0.500 1.18e-1 1.19e-1 —
Central nervous system malformation Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(2)
0.001 0.500 1.18e-1 1.19e-1 —
adult neuronal ceroid lipofuscinosis Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTSF(2)
0.001 0.500 1.18e-1 1.19e-1 —
1p36.33 duplication syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(3)
0.002 0.333 1.17e-1 1.18e-1 —
Gout Pyruvate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.001 0.500 1.04e-1 1.05e-1 —
Gout Renal glycosuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A1(2)
0.001 0.500 1.04e-1 1.05e-1 —
Intellectual developmental disorder Turnpenny-fry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCGF2(5)
0.001 0.500 1.02e-1 1.03e-1 —
Intellectual developmental disorder Ververi-brady syndrome
1 gene
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1 of 1 corroborated by 2+ sources
QRICH1(4)
0.001 0.500 1.02e-1 1.03e-1 —
Atelis syndrome Squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.001 0.500 9.99e-2 1.01e-1 —
Argininosuccinic aciduria Autism
1 gene
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1 of 1 corroborated by 2+ sources
ASL(7)
0.001 1.000 9.50e-2 9.60e-2 —
Autism Autism-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 9.50e-2 9.60e-2 —
aspartylglucosaminuria Autism
1 gene
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1 of 1 corroborated by 2+ sources
AGA(2)
0.001 1.000 9.50e-2 9.60e-2 —
Arthrogryposis with neurodevelopmental impairment and seizures Autism
1 gene
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1 of 1 corroborated by 2+ sources
SLC35A3(6)
0.001 1.000 9.50e-2 9.60e-2 —
Autism X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(5)
0.001 1.000 9.50e-2 9.60e-2 —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.