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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema Autoinflammatory disease, systemic, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(1), IKBKG(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 87 →
Anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema Bloch sulzberger syndrome
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(1), IKBKG(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 87 →
Aniridia-cerebellar ataxia-intellectual disability syndrome Gillespie syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ITPR1(6), PAX6(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 74 →
Annular epidermolytic ichthyosis Epidermolytic ichthyosis
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(6), KRT10(6)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 230 →
Annular epidermolytic ichthyosis Congenital reticular ichthyosiform erythroderma
2 genes
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2 of 2 corroborated by 2+ sources
KRT1(3), KRT10(5)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 230 →
Anosmia Congenital anosmia
2 genes
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2 of 2 corroborated by 2+ sources
CNGA2(2), TENM1(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —
Aphasia Postictal aphasia
2 genes
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2 of 2 corroborated by 2+ sources
PLAT(2), L1CAM(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Aphasia Commisural aphasia
2 genes
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2 of 2 corroborated by 2+ sources
PLAT(2), L1CAM(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Aphasia Dejerine-lichtheim phenomenon
2 genes
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2 of 2 corroborated by 2+ sources
PLAT(2), L1CAM(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Aphasia Syntactic aphasia
2 genes
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2 of 2 corroborated by 2+ sources
PLAT(2), L1CAM(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Polycystic kidney disease with tuberous sclerosis Polycystic kidneys, severe infantile with tuberous sclerosis
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), TSC2(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 70 →
Postictal aphasia Syntactic aphasia
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Posttraumatic porencephalic cyst of brain Vascular leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(2)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 198 →
Combined cellular and humoral immune defects with granulomas Combined immunodeficiency with skin granulomas
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(4), RAG2(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 173 →
Combined deficiency of factor v and factor viii Combined factor v and factor viii deficiency
2 genes
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2 of 2 corroborated by 2+ sources
LMAN1(8), MCFD2(7)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —
Commisural aphasia Postictal aphasia
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Commisural aphasia Dejerine-lichtheim phenomenon
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Commisural aphasia Syntactic aphasia
2 genes
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PLAT(1), L1CAM(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 258 →
Common arterial trunk with aortic dominance Common arterial trunk with pulmonary dominance and interrupted aortic arch
2 genes
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TBX1(1), GATA6(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 283 →
Cone monochromatism X-linked cone dysfunction syndrome with myopia
2 genes
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2 of 2 corroborated by 2+ sources
OPN1LW(3), OPN1MW(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 214 →
Cone-rod dystrophy, x-linked X-linked cone-rod dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1F(4), RPGR(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 84 →
Congenital asplenia Splenic hypoplasia
2 genes
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2 of 2 corroborated by 2+ sources
NKX2-5(2), RPSA(3)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 161 →
Congenital cerebral aneurysm Congenital malformation of cerebral vessels
2 genes
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PDCD10(1), CCM2(1)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 308 →
Congenital erythropoietic porphyria Cutaneous porphyria
2 genes
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2 of 2 corroborated by 2+ sources
GATA1(2), UROS(4)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. Cluster 125 →
Congenital factor xiii deficiency Factor xiii deficiency
2 genes
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2 of 2 corroborated by 2+ sources
F13A1(8), F13B(7)
0.667 1.000 8.44e-9 6.82e-8 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.