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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hermansky-pudlak syndrome 4 Stroke
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.003 1.000 2.10e-2 2.28e-2 ✓ sig. —
congenital disorder of glycosylation with defective fucosylation 1 Stroke
1 gene
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1 of 1 corroborated by 2+ sources
FUT8(2)
0.003 1.000 2.10e-2 2.28e-2 ✓ sig. —
PRPF8-related retinopathy Stroke
1 gene
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1 of 1 corroborated by 2+ sources
PRPF8(3)
0.003 1.000 2.10e-2 2.28e-2 ✓ sig. —
snijders blok-campeau syndrome Stroke
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.003 1.000 2.10e-2 2.28e-2 ✓ sig. —
Generalized epilepsy Glycine encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GLDC(7)
0.014 0.200 2.09e-2 2.27e-2 ✓ sig. —
Kidney cancer Very long chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DLG4(2)
0.012 0.250 2.09e-2 2.27e-2 ✓ sig. —
Atelis syndrome Upper aerodigestive tract neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
SMC5(4)
0.006 0.500 2.08e-2 2.26e-2 ✓ sig. —
Alzheimer disease Developmental delay with language and ocular abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
0.001 1.000 2.07e-2 2.25e-2 ✓ sig. Cluster 2 →
Leigh syndrome Lipoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPT1(7)
0.009 0.333 2.07e-2 2.25e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria type cblF Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
hereditary spastic paraplegia 62 Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
autosomal recessive cerebellar ataxia Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CWF19L1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC38A8(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Nonalcoholic fatty liver disease platelet abnormalities with eosinophilia and immune-mediated inflammatory disease
1 gene
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1 of 1 corroborated by 2+ sources
ARPC1B(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Carboxypeptidase n deficiency Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(4)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Anaphylatoxin inactivator deficiency Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Ankylosing spondylitis Xy gonadal dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis El-hayek-chahrour neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KDM5A(4)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(3)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis Autoinflammation and autoimmunity, systemic, with immune dysregulation 1
1 gene
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1 of 1 corroborated by 2+ sources
COPA(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis Autoinflammation with pulmonary and cutaneous vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
HCK(4)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Ankylosing spondylitis combined immunodeficiency due to OX40 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(2)
0.003 1.000 2.03e-2 2.21e-2 ✓ sig. —
Advanced sleep phase syndrome Bipolar depression
1 gene
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1 of 1 corroborated by 2+ sources
PER3(2)
0.009 0.333 2.03e-2 2.21e-2 ✓ sig. —
Behcet disease Interferon gamma receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR1(3)
0.009 0.333 2.03e-2 2.21e-2 ✓ sig. —
2,4-dienoyl-coa reductase deficiency Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
DECR1(3)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.