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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Refractory anemia Spinal cord compression
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 300 →
Renal cysts and diabetes syndrome Renal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 23 →
Thiamine-responsive megaloblastic anemia Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Alpha thalassemia x-linked intellectual disability Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Atr-x syndrome Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Thoracic disease X-linked alpha-thalassemia-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Three-vessel coronary artery disease Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 314 →
Cerebral sinovenous thrombosis thrombophilia due to activated protein c resistance
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
thrombophilia due to activated protein c resistance Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F5(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
thrombophilia, X-linked, due to factor 9 defect Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
F9(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Tibial hemimelia White sutton syndrome
1 gene
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GLI3(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 142 →
Mandibuloacral dysostosis Tight skin contracture syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 65 →
Torg-winchester syndrome Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
dilated cardiomyopathy 1E Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →
SCN5A-related cardiac rhythm disorder Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →
TUBB3-related tubulinopathy X-linked hydrocephalus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TUBB3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Coronal craniosynostosis TWIST1-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 127 →
Saethre-chotzen syndrome TWIST1-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Clapo syndrome Vascular malformation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 44 →
Cloves syndrome Vascular malformation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 44 →
Congenital intestinal duplication Vascular malformation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 44 →
Congenital macrodactylia Vascular malformation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 44 →
Congenital malformation syndromes involving early overgrowth Vascular malformation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 44 →
Vitamin d deficiency Worth syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 98 →
polycystic liver disease 4 with or without kidney cysts Vitamin d deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 98 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.