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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arthropathy Chromosome 17q23.1-q23.2 duplication syndrome
1 gene
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TBX4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Arthropathy Coxopodopatellar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Arthropathy Ischiocoxopodopatellar syndrome with pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
asphyxiating thoracic dystrophy 2 Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Asthenozoospermia quebec platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 123 →
Asymmetric crying face association Bor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EYA1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 145 →
Ataxia with vitamin e deficiency hypercholesterolemia, autosomal dominant, type B
1 gene
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1 of 1 corroborated by 2+ sources
APOB(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
Ataxia with vitamin e deficiency Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
Ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus Juvenile-onset diabetes mellitus-central and peripheral neurodegeneration syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
ATM-related cancer predisposition Chromosome 17q21.31 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATM(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 348 →
Atr-x syndrome Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Atr-x syndrome Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Atrial standstill dilated cardiomyopathy 1E
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →
Atrial standstill SCN5A-related cardiac rhythm disorder
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →
Atrophic retina Bietti crystalline corneoretinal dystrophy
1 gene
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ABCA4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Atrophoderma vermiculata Keratosis follicularis spinulosa decalvans
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 194 →
Atypical hemolytic uremic syndrome Factor i deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CFI(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 107 →
Atypical hemolytic uremic syndrome Factor h deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CFH(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 107 →
Atypical teratoid rhabdoid tumor Schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 120 →
Au-kline syndrome X-linked distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Au-kline syndrome menkes disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Au-kline syndrome neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-hip dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPK(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 385 →
Au-kline syndrome Chuvash erythrocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VHL(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 385 →
Au-kline syndrome Erythrocytosis due to tissue hypoxemia
1 gene
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VHL(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 385 →
autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency Mycosis fungoides
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.