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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lipoatrophic diabetes mellitus Mandibuloacral dysostosis
1 gene
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LMNA(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 65 →
maternal riboflavin deficiency Riboflavin transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
melanoma, cutaneous malignant, susceptibility to, 3 Well-differentiated liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
CDK4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 342 →
methionine adenosyltransferase deficiency S-adenosylhomocysteine hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAT1A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
microcephaly with lissencephaly and/or hydranencephaly Microlissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
NDE1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 220 →
Microhydranencephaly Microlissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
NDE1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 220 →
Mitochondrial hepatopathy Schilder disease
1 gene
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1 of 1 corroborated by 2+ sources
POLG(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 97 →
Mitochondrial hepatopathy perrault syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
TWNK(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 97 →
mitochondrial trifunctional protein deficiency Trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
mucopolysaccharidosis type 1 Pfaundler-hurler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 296 →
Multicystic dysplastic kidney Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 23 →
Multiminicore myopathy Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy Multiminicore myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Multiminicore myopathy MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
dilated cardiomyopathy 1S Multiminicore myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 89 →
Multiminicore myopathy Progressive contractures limb-girdle weakness muscle dystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TTN(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
multiple endocrine neoplasia type 1 Vipoma
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Kenny-caffey syndrome muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 108 →
Arginine-glycine amidinotransferase deficiency Cerebral creatine deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
arrhythmogenic cardiomyopathy with wooly hair and keratoderma Right ventricular cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
DSP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 201 →
Arterial tortuosity syndrome cutis laxa, autosomal recessive, type 1B
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 66 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Congenital pectus carinatum
1 gene
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FBN1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Coronary artery dissection
1 gene
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FBN1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
17q23.1q23.2 microdeletion syndrome Arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Amelia Arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.