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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cleft lip and cleft of alveolar process of maxilla Popliteal pterygium syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRF6(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Acro-dermo-ungual-lacrimal-tooth syndrome Post-operative stroke
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Post-operative stroke
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Limb-mammary syndrome Post-operative stroke
1 gene
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1 of 1 corroborated by 2+ sources
TP63(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Post-operative stroke Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Post-operative stroke Sweat gland neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Pregnancy disorder silver-russell syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Pregnancy disorder Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 300 →
Bockenheimer syndrome Primary congenital glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
TEK(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Mucocutaneous venous malformations Primary congenital glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
TEK(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital pain insensitivity Primary erythromelalgia
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 164 →
Paroxysmal extreme pain disorder Primary erythromelalgia
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 164 →
hawkinsinuria Hypertyrosinemia
1 gene
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1 of 1 corroborated by 2+ sources
HPD(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 247 →
hawkinsinuria Tyrosinemia
1 gene
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1 of 1 corroborated by 2+ sources
HPD(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 247 →
Alport syndrome, x-linked hearing loss, X-linked 6
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 49 →
hearing loss, X-linked 6 X-linked nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Heimler syndrome Spinocerebellar ataxia blindness deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PEX6(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 219 →
Hemifacial microsomia T-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 48 →
Hemihyperplasia Pregnancy disorder
1 gene
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IGF2(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Hemihyperplasia Hepatoblastoma
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Dysphasia hemiplegic migraine-developmental and epileptic encephalopathy spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
hemochromatosis type 1 Variegate porphyria
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 196 →
Digenic hemochromatosis hemochromatosis type 2A
1 gene
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1 of 1 corroborated by 2+ sources
HJV(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 135 →
Delta-beta thalassemia Hemoglobin lepore beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Delta-beta thalassemia Hemoglobinopathy toms river
1 gene
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1 of 1 corroborated by 2+ sources
HBG2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 19 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.