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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Osteochondroma Werner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTPN11(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Osteolysis, hereditary, of carpal bones with or without nephropathy Parathyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Osteopenia severe combined immunodeficiency due to CARD11 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 327 →
Caffey disease Osteopenia
1 gene
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1 of 1 corroborated by 2+ sources
COL1A1(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Maternal hypertension Osteopenia
1 gene
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COL1A1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Overactive bladder Urinary retention
1 gene
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EDN1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Pachyonychia congenita Sebocystomatosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT17(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
Cataract-corneal dystrophy syndrome Paranoid schizophrenia
1 gene
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PAX6(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 74 →
Paranoid schizophrenia PAX6-related ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 74 →
Paroxysmal dystonia Paroxysmal dystonic choreoathetosis
1 gene
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1 of 1 corroborated by 2+ sources
PRRT2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 58 →
Familial infantile convulsions with paroxysmal choreoathetosis Paroxysmal nonkinesigenic dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
PRRT2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 58 →
Patterned macular dystrophy PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Adrenocortical carcinoma Penile neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Choroid plexus carcinoma Penile neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cardiac tamponade Pericardial effusion
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Pericardial effusion Urinary bladder neck obstruction
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 375 →
Peroxisomal disorder phytanoyl-CoA hydroxylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PHYH(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Peroxisomal disorder peroxisome biogenesis disorder due to PEX1 defect
1 gene
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1 of 1 corroborated by 2+ sources
PEX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Heimler syndrome peroxisome biogenesis disorder due to PEX1 defect
1 gene
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1 of 1 corroborated by 2+ sources
PEX1(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 219 →
platelet-type bleeding disorder 18 Thrombasthenia
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 33 →
POLR1C-related disorder Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1C(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Myosin storage myopathy Polymorphic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy Polymorphic ventricular tachycardia
1 gene
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MYH7(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
MYH7-related skeletal myopathy Polymorphic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
dilated cardiomyopathy 1S Polymorphic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.