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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital methemoglobinemia Cyanosis
1 gene
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1 of 1 corroborated by 2+ sources
CYB5R3(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital mitral valve atresia Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
FOXP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 324 →
Extraskeletal myxoid chondrosarcoma TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 127 →
Central areolar choroidal dystrophy EYS-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
EYS(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Facioscapulohumeral muscular dystrophy immunodeficiency-centromeric instability-facial anomalies syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3B(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Factor xi deficiency Intracranial thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F11(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
FADD-related immunodeficiency Oculopalatosekeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FADD(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
familial hemiplegic migraine Hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
SCN1A(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 391 →
fanconi anemia complementation group d1 Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Chordoma fanconi anemia complementation group d1
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
fanconi anemia complementation group d1 Respiratory system cancer
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
fanconi anemia complementation group i Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 97 →
fanconi anemia complementation group n Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PALB2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
fanconi anemia complementation group o Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
fanconi anemia, complementation group s Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRCA1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies Hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
focal segmental glomerulosclerosis 7 Nephrotic syndrome, focal segmental type
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
focal segmental glomerulosclerosis 9 Nephrotic syndrome, focal segmental type
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Frontal lobe epilepsy Intracranial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A10(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 273 →
frontotemporal dementia and/or amyotrophic lateral sclerosis 3 Paget disease
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly FZD4-related exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
FZD4(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
G6PD deficiency Glucose-6-phosphate dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
G6PD(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 87 →
glyceronephosphate O-acyltransferase deficiency Rhizomelic chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
GNPAT(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 301 →
Glycine encephalopathy multiple mitochondrial dysfunctions syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
GCSH(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
GPR143-related foveal hypoplasia Ocular albinism
1 gene
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1 of 1 corroborated by 2+ sources
GPR143(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.