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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Adrenocortical carcinoma Breast implant-associated anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 3 →
Breast implant-associated anaplastic large cell lymphoma Choroid plexus carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 3 →
Breast implant-associated anaplastic large cell lymphoma Choroid plexus papilloma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 3 →
C1 esterase inhibitor deficiency Hereditary c1 esterase inhibitor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 383 →
C1 esterase inhibitor deficiency C9 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
C9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 383 →
Cadasil Type i interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 150 →
Cadasil retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 150 →
Café-au-lait macules Cafe-au-lait spots
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Café-au-lait macules Congenital malformation syndromes associated with short stature
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
17q11.2 microduplication syndrome Cafe-au-lait spots
1 gene
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1 of 1 corroborated by 2+ sources
NF1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 77 →
Cafe-au-lait spots Cervical lymphadenopathy
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 77 →
Cafe-au-lait spots Watson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NF1(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 77 →
Aortic arch syndrome Carbamazepine hypersensitivity
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Carbamazepine hypersensitivity Cervical intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Carcinoma in situ Curling ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Carcinoma in situ Intestinal polyps
1 gene
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PTGS2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cardiac valvular dysplasia Congenital idiopathic intestinal pseudoobstruction
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Cardiac valvular dysplasia Otopalatodigital spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Cardiac valvular dysplasia Terminal osseous dysplasia with pigmentary defects
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Cardiac valvular dysplasia X-linked ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Cardiac valvular dysplasia X-linked keloid scarring syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Carotid artery thrombosis Thrombomodulin-related bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
THBD(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Carotid artery thrombosis Congenital prekallikrein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
KLKB1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Carotid atherosclerosis Small cell ovary carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 120 →
Cardiac valvular dysplasia COL1A2-related Ehlers-Danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL1A2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.